Analysis of interatomic Contacts of Structural Units in PDB entry:
5NCC

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5NCC entry

There are 6 chains in PDB entry 5NCC (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 61	SER 645
B	SER 61	SER 645
C	SER 61	SER 645
D	SER 61	SER 645
E	SER 61	SER 645
F	SER 61	SER 645

There are120 helices in PDB entry 5NCC. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	70	75	Right-handed alpha
Helix 2	AA2	A	92	105	Right-handed alpha
Helix 3	AA3	A	121	126	Right-handed alpha
Helix 4	AA4	A	129	134	Right-handed alpha
Helix 5	AA5	A	147	151	Right-handed 310
Helix 6	AA6	A	164	169	Right-handed 310
Helix 7	AA7	A	178	184	Right-handed alpha
Helix 8	AA8	A	191	201	Right-handed alpha
Helix 9	AA9	A	231	242	Right-handed alpha
Helix 10	AB1	A	275	281	Right-handed alpha
Helix 11	AB2	A	341	354	Right-handed alpha
Helix 12	AB3	A	361	365	Right-handed 310
Helix 13	AB4	A	399	403	Right-handed 310
Helix 14	AB5	A	414	419	Right-handed alpha
Helix 15	AB6	A	461	471	Right-handed alpha
Helix 16	AB7	A	521	539	Right-handed alpha
Helix 17	AB8	A	540	547	Right-handed alpha
Helix 18	AB9	A	559	570	Right-handed alpha
Helix 19	AC1	A	609	613	Right-handed 310
Helix 20	AC2	A	621	637	Right-handed alpha
Helix 21	AC3	B	70	75	Right-handed alpha
Helix 22	AC4	B	92	105	Right-handed alpha
Helix 23	AC5	B	121	126	Right-handed alpha
Helix 24	AC6	B	129	134	Right-handed alpha
Helix 25	AC7	B	147	151	Right-handed 310
Helix 26	AC8	B	164	169	Right-handed 310
Helix 27	AC9	B	178	184	Right-handed alpha
Helix 28	AD1	B	191	201	Right-handed alpha
Helix 29	AD2	B	231	242	Right-handed alpha
Helix 30	AD3	B	275	281	Right-handed alpha
Helix 31	AD4	B	341	354	Right-handed alpha
Helix 32	AD5	B	361	365	Right-handed 310
Helix 33	AD6	B	399	403	Right-handed 310
Helix 34	AD7	B	414	419	Right-handed alpha
Helix 35	AD8	B	461	471	Right-handed alpha
Helix 36	AD9	B	521	539	Right-handed alpha
Helix 37	AE1	B	540	547	Right-handed alpha
Helix 38	AE2	B	559	570	Right-handed alpha
Helix 39	AE3	B	609	613	Right-handed 310
Helix 40	AE4	B	621	637	Right-handed alpha
Helix 41	AE5	C	70	75	Right-handed alpha
Helix 42	AE6	C	92	105	Right-handed alpha
Helix 43	AE7	C	121	126	Right-handed alpha
Helix 44	AE8	C	129	134	Right-handed alpha
Helix 45	AE9	C	147	151	Right-handed 310
Helix 46	AF1	C	164	169	Right-handed 310
Helix 47	AF2	C	178	184	Right-handed alpha
Helix 48	AF3	C	191	201	Right-handed alpha
Helix 49	AF4	C	231	242	Right-handed alpha
Helix 50	AF5	C	275	281	Right-handed alpha
Helix 51	AF6	C	341	353	Right-handed alpha
Helix 52	AF7	C	361	365	Right-handed 310
Helix 53	AF8	C	399	403	Right-handed 310
Helix 54	AF9	C	414	419	Right-handed alpha
Helix 55	AG1	C	461	471	Right-handed alpha
Helix 56	AG2	C	521	539	Right-handed alpha
Helix 57	AG3	C	540	547	Right-handed alpha
Helix 58	AG4	C	559	570	Right-handed alpha
Helix 59	AG5	C	609	613	Right-handed 310
Helix 60	AG6	C	621	637	Right-handed alpha
Helix 61	AG7	D	70	75	Right-handed alpha
Helix 62	AG8	D	92	105	Right-handed alpha
Helix 63	AG9	D	121	126	Right-handed alpha
Helix 64	AH1	D	129	134	Right-handed alpha
Helix 65	AH2	D	147	151	Right-handed 310
Helix 66	AH3	D	164	169	Right-handed 310
Helix 67	AH4	D	178	184	Right-handed alpha
Helix 68	AH5	D	191	201	Right-handed alpha
Helix 69	AH6	D	231	242	Right-handed alpha
Helix 70	AH7	D	275	281	Right-handed alpha
Helix 71	AH8	D	341	354	Right-handed alpha
Helix 72	AH9	D	361	365	Right-handed 310
Helix 73	AI1	D	399	403	Right-handed 310
Helix 74	AI2	D	414	419	Right-handed alpha
Helix 75	AI3	D	461	471	Right-handed alpha
Helix 76	AI4	D	521	539	Right-handed alpha
Helix 77	AI5	D	540	547	Right-handed alpha
Helix 78	AI6	D	559	570	Right-handed alpha
Helix 79	AI7	D	609	613	Right-handed 310
Helix 80	AI8	D	621	637	Right-handed alpha
Helix 81	AI9	E	70	75	Right-handed alpha
Helix 82	AJ1	E	92	105	Right-handed alpha
Helix 83	AJ2	E	121	126	Right-handed alpha
Helix 84	AJ3	E	129	134	Right-handed alpha
Helix 85	AJ4	E	147	151	Right-handed 310
Helix 86	AJ5	E	164	169	Right-handed 310
Helix 87	AJ6	E	178	184	Right-handed alpha
Helix 88	AJ7	E	191	201	Right-handed alpha
Helix 89	AJ8	E	231	242	Right-handed alpha
Helix 90	AJ9	E	275	281	Right-handed alpha
Helix 91	AK1	E	341	353	Right-handed alpha
Helix 92	AK2	E	361	365	Right-handed 310
Helix 93	AK3	E	399	403	Right-handed 310
Helix 94	AK4	E	414	419	Right-handed alpha
Helix 95	AK5	E	461	471	Right-handed alpha
Helix 96	AK6	E	521	539	Right-handed alpha
Helix 97	AK7	E	540	547	Right-handed alpha
Helix 98	AK8	E	559	570	Right-handed alpha
Helix 99	AK9	E	609	613	Right-handed 310
Helix 100	AL1	E	621	637	Right-handed alpha
Helix 101	AL2	F	70	75	Right-handed alpha
Helix 102	AL3	F	92	105	Right-handed alpha
Helix 103	AL4	F	121	126	Right-handed alpha
Helix 104	AL5	F	129	134	Right-handed alpha
Helix 105	AL6	F	147	151	Right-handed 310
Helix 106	AL7	F	164	169	Right-handed 310
Helix 107	AL8	F	178	184	Right-handed alpha
Helix 108	AL9	F	191	201	Right-handed alpha
Helix 109	AM1	F	231	242	Right-handed alpha
Helix 110	AM2	F	275	281	Right-handed alpha
Helix 111	AM3	F	341	354	Right-handed alpha
Helix 112	AM4	F	361	365	Right-handed 310
Helix 113	AM5	F	399	403	Right-handed 310
Helix 114	AM6	F	414	419	Right-handed alpha
Helix 115	AM7	F	461	471	Right-handed alpha
Helix 116	AM8	F	521	540	Right-handed alpha
Helix 117	AM9	F	540	547	Right-handed alpha
Helix 118	AN1	F	559	570	Right-handed alpha
Helix 119	AN2	F	609	613	Right-handed 310
Helix 120	AN3	F	621	637	Right-handed alpha

There are 36 sheets in PDB entry 5NCC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	83	84	first strand
Strand 2	A	327	331	parallel
Strand 3	A	312	318	anti-parallel
Strand 4	A	297	303	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	290	294	first strand
Strand 2	A	110	114	parallel
Strand 3	A	86	89	parallel
Strand 4	A	337	339	parallel
Strand 5	A	605	607	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	142	143	first strand
Strand 2	A	156	157	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	260	263	first strand
Strand 2	A	434	438	anti-parallel
Strand 3	A	448	453	anti-parallel
Strand 4	A	482	489	anti-parallel
Strand 5	A	383	390	anti-parallel
Strand 6	A	572	573	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	268	269	first strand
Strand 2	A	272	273	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	497	498	first strand
Strand 2	A	511	512	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	83	84	first strand
Strand 2	B	327	331	parallel
Strand 3	B	312	318	anti-parallel
Strand 4	B	297	303	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	290	294	first strand
Strand 2	B	110	114	parallel
Strand 3	B	86	89	parallel
Strand 4	B	337	339	parallel
Strand 5	B	605	607	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	142	143	first strand
Strand 2	B	156	157	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	260	263	first strand
Strand 2	B	434	438	anti-parallel
Strand 3	B	448	453	anti-parallel
Strand 4	B	482	489	anti-parallel
Strand 5	B	383	390	anti-parallel
Strand 6	B	572	573	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	268	269	first strand
Strand 2	B	272	273	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	377	379	first strand
Strand 2	B	496	498	anti-parallel
Strand 3	B	511	512	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	83	84	first strand
Strand 2	C	327	331	parallel
Strand 3	C	312	318	anti-parallel
Strand 4	C	297	303	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	290	294	first strand
Strand 2	C	110	114	parallel
Strand 3	C	86	89	parallel
Strand 4	C	337	339	parallel
Strand 5	C	605	607	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	142	143	first strand
Strand 2	C	156	157	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	260	263	first strand
Strand 2	C	434	438	anti-parallel
Strand 3	C	448	453	anti-parallel
Strand 4	C	482	489	anti-parallel
Strand 5	C	383	390	anti-parallel
Strand 6	C	572	573	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	268	269	first strand
Strand 2	C	272	273	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	377	379	first strand
Strand 2	C	496	498	anti-parallel
Strand 3	C	511	512	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	83	84	first strand
Strand 2	D	327	331	parallel
Strand 3	D	312	319	anti-parallel
Strand 4	D	296	303	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	290	294	first strand
Strand 2	D	110	114	parallel
Strand 3	D	86	89	parallel
Strand 4	D	337	339	parallel
Strand 5	D	605	607	parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	142	143	first strand
Strand 2	D	156	157	anti-parallel

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There are 6 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	260	263	first strand
Strand 2	D	434	438	anti-parallel
Strand 3	D	448	453	anti-parallel
Strand 4	D	482	489	anti-parallel
Strand 5	D	383	390	anti-parallel
Strand 6	D	572	573	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	268	269	first strand
Strand 2	D	272	273	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	497	498	first strand
Strand 2	D	511	512	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	83	84	first strand
Strand 2	E	327	331	parallel
Strand 3	E	312	319	anti-parallel
Strand 4	E	296	303	anti-parallel

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There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	290	294	first strand
Strand 2	E	110	114	parallel
Strand 3	E	86	89	parallel
Strand 4	E	337	339	parallel
Strand 5	E	605	607	parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	142	143	first strand
Strand 2	E	156	157	anti-parallel

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There are 6 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	260	263	first strand
Strand 2	E	434	438	anti-parallel
Strand 3	E	448	453	anti-parallel
Strand 4	E	482	489	anti-parallel
Strand 5	E	383	390	anti-parallel
Strand 6	E	572	573	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	268	269	first strand
Strand 2	E	272	273	anti-parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	377	379	first strand
Strand 2	E	496	498	anti-parallel
Strand 3	E	511	512	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	83	84	first strand
Strand 2	F	327	331	parallel
Strand 3	F	312	318	anti-parallel
Strand 4	F	297	303	anti-parallel

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There are 5 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	290	294	first strand
Strand 2	F	110	114	parallel
Strand 3	F	86	89	parallel
Strand 4	F	337	339	parallel
Strand 5	F	605	607	parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	142	143	first strand
Strand 2	F	156	157	anti-parallel

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There are 6 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	260	263	first strand
Strand 2	F	434	438	anti-parallel
Strand 3	F	448	453	anti-parallel
Strand 4	F	482	489	anti-parallel
Strand 5	F	383	390	anti-parallel
Strand 6	F	572	573	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	268	269	first strand
Strand 2	F	272	273	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	497	498	first strand
Strand 2	F	511	512	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5NCC

Analysis of interatomic Contacts of Structural Units in PDB entry:
5NCC