Analysis of interatomic Contacts of Structural Units in PDB entry:
5NCD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5NCD entry

There are 4 chains in PDB entry 5NCD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 68MET 273
B
 ARG 68MET 273
C
 ARG 68MET 273
D
 ARG 68MET 273
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 39 helices in PDB entry 5NCD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
82 92Right-handed alpha
Helix 2
AA2
A
102 109Right-handed alpha
Helix 3
AA3
A
109 119Right-handed alpha
Helix 4
AA4
A
131 136Right-handed alpha
Helix 5
AA5
A
140 157Right-handed alpha
Helix 6
AA6
A
174 184Right-handed alpha
Helix 7
AA7
A
196 201Right-handed 310
Helix 8
AA8
A
204 219Right-handed alpha
Helix 9
AA9
A
233 245Right-handed alpha
Helix 10
AB1
A
245 250Right-handed alpha
Helix 11
AB2
A
258 262Right-handed 310
Helix 12
AB3
B
82 93Right-handed alpha
Helix 13
AB4
B
102 109Right-handed alpha
Helix 14
AB5
B
109 119Right-handed alpha
Helix 15
AB6
B
131 136Right-handed alpha
Helix 16
AB7
B
140 157Right-handed alpha
Helix 17
AB8
B
174 184Right-handed alpha
Helix 18
AB9
B
196 200Right-handed 310
Helix 19
AC1
B
204 218Right-handed alpha
Helix 20
AC2
B
233 251Right-handed alpha
Helix 21
AC3
C
82 93Right-handed alpha
Helix 22
AC4
C
102 109Right-handed alpha
Helix 23
AC5
C
109 119Right-handed alpha
Helix 24
AC6
C
131 136Right-handed alpha
Helix 25
AC7
C
140 157Right-handed alpha
Helix 26
AC8
C
174 184Right-handed alpha
Helix 27
AC9
C
196 201Right-handed 310
Helix 28
AD1
C
204 218Right-handed alpha
Helix 29
AD2
C
233 250Right-handed alpha
Helix 30
AD3
D
82 93Right-handed alpha
Helix 31
AD4
D
102 109Right-handed alpha
Helix 32
AD5
D
109 119Right-handed alpha
Helix 33
AD6
D
131 136Right-handed alpha
Helix 34
AD7
D
140 157Right-handed alpha
Helix 35
AD8
D
174 184Right-handed alpha
Helix 36
AD9
D
196 200Right-handed 310
Helix 37
AE1
D
204 219Right-handed alpha
Helix 38
AE2
D
233 250Right-handed alpha
Helix 39
AE3
D
258 262Right-handed 310
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There are 10 sheets in PDB entry 5NCD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
122 125first strand
Strand 2
A
98 101parallel
Strand 3
A
70 78parallel
Strand 4
A
224 230parallel
Strand 5
A
193 194parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
162 163first strand
Strand 2
A
187 188parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
122 125first strand
Strand 2
B
98 101parallel
Strand 3
B
70 78parallel
Strand 4
B
224 230parallel
Strand 5
B
193 194parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
162 163first strand
Strand 2
B
187 188parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
122 125first strand
Strand 2
C
98 101parallel
Strand 3
C
70 78parallel
Strand 4
C
224 229parallel
Strand 5
C
193 194parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
122 125first strand
Strand 2
C
98 101parallel
Strand 3
C
70 78parallel
Strand 4
C
253 254parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
162 163first strand
Strand 2
C
187 188parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
122 125first strand
Strand 2
D
98 101parallel
Strand 3
D
69 78parallel
Strand 4
D
224 230parallel
Strand 5
D
193 194parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
122 125first strand
Strand 2
D
98 101parallel
Strand 3
D
69 78parallel
Strand 4
D
252 254parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
162 163first strand
Strand 2
D
187 188parallel
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