Analysis of interatomic Contacts of Structural Units in PDB entry:
5NCJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5NCJ entry

There are 2 chains in PDB entry 5NCJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1HIS 262
B
 GLN 2HIS 262
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 20 helices in PDB entry 5NCJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
4 15Right-handed alpha
Helix 2
AA2
A
24 39Right-handed alpha
Helix 3
AA3
A
61 64Right-handed 310
Helix 4
AA4
A
65 74Right-handed alpha
Helix 5
AA5
A
74 86Right-handed alpha
Helix 6
AA6
A
112 121Right-handed alpha
Helix 7
AA7
A
149 154Right-handed 310
Helix 8
AA8
A
171 176Right-handed 310
Helix 9
AA9
A
178 187Right-handed alpha
Helix 10
AB1
A
232 234Right-handed 310
Helix 11
AB2
B
4 15Right-handed alpha
Helix 12
AB3
B
24 39Right-handed alpha
Helix 13
AB4
B
61 64Right-handed 310
Helix 14
AB5
B
65 73Right-handed alpha
Helix 15
AB6
B
74 86Right-handed alpha
Helix 16
AB7
B
112 121Right-handed alpha
Helix 17
AB8
B
149 154Right-handed 310
Helix 18
AB9
B
171 176Right-handed 310
Helix 19
AC1
B
178 189Right-handed alpha
Helix 20
AC2
B
232 234Right-handed 310
Back to top of page

There are 4 sheets in PDB entry 5NCJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
16 19first strand
Strand 2
A
201 204anti-parallel
Strand 3
A
127 133anti-parallel
Strand 4
A
221 230anti-parallel
Strand 5
A
89 99anti-parallel
Strand 6
A
55 59anti-parallel
Strand 7
A
46 48anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
107 110first strand
Strand 2
A
210 212anti-parallel
Strand 3
A
145 147anti-parallel
Strand 4
A
191 192anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
16 19first strand
Strand 2
B
201 204anti-parallel
Strand 3
B
127 133anti-parallel
Strand 4
B
221 230anti-parallel
Strand 5
B
89 99anti-parallel
Strand 6
B
55 59anti-parallel
Strand 7
B
46 48anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
107 110first strand
Strand 2
B
210 212anti-parallel
Strand 3
B
145 147anti-parallel
Strand 4
B
191 192anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il