Analysis of interatomic Contacts of Structural Units in PDB entry:
5NCK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5NCK entry

There are 2 chains in PDB entry 5NCK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ARG 291
B
 MET 1ARG 291
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 5NCK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
33 36Right-handed 310
Helix 2
AA2
A
37 53Right-handed alpha
Helix 3
AA3
A
54 56Right-handed 310
Helix 4
AA4
A
89 99Right-handed alpha
Helix 5
AA5
A
107 119Right-handed alpha
Helix 6
AA6
A
156 159Right-handed 310
Helix 7
AA7
A
167 172Right-handed alpha
Helix 8
AA8
A
172 185Right-handed alpha
Helix 9
AA9
A
190 199Right-handed alpha
Helix 10
AB1
A
201 227Right-handed alpha
Helix 11
AB2
A
235 240Right-handed 310
Helix 12
AB3
A
241 254Right-handed alpha
Helix 13
AB4
A
257 262Right-handed alpha
Helix 14
AB5
A
271 273Right-handed 310
Helix 15
AB6
A
274 289Right-handed alpha
Helix 16
AB7
B
33 36Right-handed 310
Helix 17
AB8
B
37 54Right-handed alpha
Helix 18
AB9
B
89 99Right-handed alpha
Helix 19
AC1
B
107 119Right-handed alpha
Helix 20
AC2
B
156 159Right-handed 310
Helix 21
AC3
B
167 172Right-handed alpha
Helix 22
AC4
B
172 185Right-handed alpha
Helix 23
AC5
B
189 199Right-handed alpha
Helix 24
AC6
B
201 227Right-handed alpha
Helix 25
AC7
B
235 241Right-handed 310
Helix 26
AC8
B
242 254Right-handed alpha
Helix 27
AC9
B
257 262Right-handed alpha
Helix 28
AD1
B
271 273Right-handed 310
Helix 29
AD2
B
274 289Right-handed alpha
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There are 8 sheets in PDB entry 5NCK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
28 31first strand
Strand 2
A
12 19anti-parallel
Strand 3
A
2 8anti-parallel
Strand 4
A
60 64parallel
Strand 5
A
102 106parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
67 69first strand
Strand 2
A
74 77anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
145 147first strand
Strand 2
A
136 142anti-parallel
Strand 3
A
127 132anti-parallel
Strand 4
A
230 234parallel
Strand 5
A
265 268parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
161 162first strand
Strand 2
A
165 166anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
24 31first strand
Strand 2
B
12 19anti-parallel
Strand 3
B
2 8anti-parallel
Strand 4
B
60 64parallel
Strand 5
B
102 106parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
67 69first strand
Strand 2
B
74 77anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
145 146first strand
Strand 2
B
136 142anti-parallel
Strand 3
B
127 132anti-parallel
Strand 4
B
230 234parallel
Strand 5
B
265 268parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
161 162first strand
Strand 2
B
165 166anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il