Analysis of interatomic Contacts of Structural Units in PDB entry:
5NCL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5NCL entry

There are 3 chains in PDB entry 5NCL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 266LEU 756
B
 MET 94ILE 284
D
 ASP 210PRO 214
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 5NCL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
280 316Right-handed alpha
Helix 2
AA2
A
321 345Right-handed alpha
Helix 3
AA3
A
436 445Right-handed alpha
Helix 4
AA4
A
448 469Right-handed alpha
Helix 5
AA5
A
553 566Right-handed alpha
Helix 6
AA6
A
579 583Right-handed 310
Helix 7
AA7
A
591 607Right-handed alpha
Helix 8
AA8
A
615 625Right-handed alpha
Helix 9
AA9
A
625 630Right-handed alpha
Helix 10
AB1
A
641 650Right-handed alpha
Helix 11
AB2
A
652 656Right-handed 310
Helix 12
AB3
A
678 683Right-handed 310
Helix 13
AB4
A
696 700Right-handed 310
Helix 14
AB5
A
745 754Right-handed alpha
Helix 15
AB6
B
121 141Right-handed alpha
Helix 16
AB7
B
142 148Right-handed 310
Helix 17
AB8
B
177 195Right-handed alpha
Helix 18
AB9
B
209 232Right-handed alpha
Helix 19
AC1
B
234 241Right-handed 310
Helix 20
AC2
B
242 260Right-handed alpha
Helix 21
AC3
B
264 269Right-handed 310
Helix 22
AC4
B
271 278Right-handed alpha
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There are 2 sheets in PDB entry 5NCL. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
353 360first strand
Strand 2
A
365 370anti-parallel
Strand 3
A
378 384anti-parallel
Strand 4
A
424 430anti-parallel
Strand 5
A
415 420anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
481 483first strand
Strand 2
A
489 491anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il