Analysis of interatomic Contacts of Structural Units in PDB entry:
5NCS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5NCS entry

There are 2 chains in PDB entry 5NCS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO -4GLU 408
B
 PRO -4GLU 408
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 5NCS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
-1 58Right-handed alpha
Helix 2
AA2
A
67 80Right-handed alpha
Helix 3
AA3
A
83 94Right-handed alpha
Helix 4
AA4
A
100 119Right-handed alpha
Helix 5
AA5
A
139 151Right-handed alpha
Helix 6
AA6
A
163 176Right-handed alpha
Helix 7
AA7
A
210 214Right-handed 310
Helix 8
AA8
A
270 278Right-handed alpha
Helix 9
AA9
A
279 288Right-handed alpha
Helix 10
AB1
A
313 319Right-handed alpha
Helix 11
AB2
A
321 325Right-handed 310
Helix 12
AB3
A
362 368Right-handed alpha
Helix 13
AB4
B
-1 58Right-handed alpha
Helix 14
AB5
B
67 80Right-handed alpha
Helix 15
AB6
B
83 94Right-handed alpha
Helix 16
AB7
B
100 119Right-handed alpha
Helix 17
AB8
B
139 150Right-handed alpha
Helix 18
AB9
B
163 176Right-handed alpha
Helix 19
AC1
B
210 214Right-handed 310
Helix 20
AC2
B
270 277Right-handed alpha
Helix 21
AC3
B
279 288Right-handed alpha
Helix 22
AC4
B
313 319Right-handed alpha
Helix 23
AC5
B
321 325Right-handed 310
Helix 24
AC6
B
362 368Right-handed alpha
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There are 8 sheets in PDB entry 5NCS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
64 66first strand
Strand 2
A
397 403anti-parallel
Strand 3
A
385 391anti-parallel
Strand 4
A
258 265anti-parallel
Strand 5
A
246 252anti-parallel
Strand 6
A
226 242anti-parallel
Strand 7
A
215 220anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
64 66first strand
Strand 2
A
397 403anti-parallel
Strand 3
A
385 391anti-parallel
Strand 4
A
258 265anti-parallel
Strand 5
A
246 252anti-parallel
Strand 6
A
226 242anti-parallel
Strand 7
A
291 300anti-parallel
Strand 8
A
377 380parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
153 157first strand
Strand 2
A
123 133parallel
Strand 3
A
193 202anti-parallel
Strand 4
A
342 351parallel
Strand 5
A
302 309anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
205 207first strand
Strand 2
A
355 357parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
64 66first strand
Strand 2
B
397 403anti-parallel
Strand 3
B
385 391anti-parallel
Strand 4
B
258 265anti-parallel
Strand 5
B
246 253anti-parallel
Strand 6
B
226 242anti-parallel
Strand 7
B
215 220anti-parallel
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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
64 66first strand
Strand 2
B
397 403anti-parallel
Strand 3
B
385 391anti-parallel
Strand 4
B
258 265anti-parallel
Strand 5
B
246 253anti-parallel
Strand 6
B
226 242anti-parallel
Strand 7
B
291 300anti-parallel
Strand 8
B
377 380parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
153 157first strand
Strand 2
B
123 133parallel
Strand 3
B
193 202anti-parallel
Strand 4
B
342 351parallel
Strand 5
B
302 309anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
205 207first strand
Strand 2
B
355 357parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il