Analysis of interatomic Contacts of Structural Units in PDB entry:
5NCW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5NCW entry

There are 2 chains in PDB entry 5NCW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY -5LYS 328
B
 PRO 376GLU 408
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 5NCW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
-2 20Right-handed alpha
Helix 2
AA2
A
28 41Right-handed alpha
Helix 3
AA3
A
44 55Right-handed alpha
Helix 4
AA4
A
61 79Right-handed alpha
Helix 5
AA5
A
100 112Right-handed alpha
Helix 6
AA6
A
124 136Right-handed alpha
Helix 7
AA7
A
171 175Right-handed 310
Helix 8
AA8
A
231 239Right-handed alpha
Helix 9
AA9
A
240 251Right-handed alpha
Helix 10
AB1
A
274 279Right-handed alpha
Helix 11
AB2
A
282 286Right-handed 310
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There are 3 sheets in PDB entry 5NCW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
25 27first strand
Strand 2
B
397 403anti-parallel
Strand 3
B
385 391anti-parallel
Strand 4
A
219 226anti-parallel
Strand 5
A
207 213anti-parallel
Strand 6
A
187 203anti-parallel
Strand 7
A
176 181anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
25 27first strand
Strand 2
B
397 403anti-parallel
Strand 3
B
385 391anti-parallel
Strand 4
A
219 226anti-parallel
Strand 5
A
207 213anti-parallel
Strand 6
A
187 203anti-parallel
Strand 7
A
252 261anti-parallel
Strand 8
B
377 380parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
114 118first strand
Strand 2
A
84 94parallel
Strand 3
A
154 165anti-parallel
Strand 4
A
316 328anti-parallel
Strand 5
A
300 312anti-parallel
Strand 6
A
263 270anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il