Analysis of interatomic Contacts of Structural Units in PDB entry:
5ND2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5ND2 entry

There are 3 chains in PDB entry 5ND2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
C
 SER 61ALA 503
A
 ARG 2SER 439
B
 ARG 2ASP 437
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 49 helices in PDB entry 5ND2. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
C
74 81Right-handed alpha
Helix 2
AA2
C
131 150Right-handed alpha
Helix 3
AA3
C
164 170Right-handed alpha
Helix 4
AA4
C
177 190Right-handed alpha
Helix 5
AA5
C
350 366Right-handed alpha
Helix 6
AA6
C
427 449Right-handed alpha
Helix 7
AA7
C
456 460Right-handed 310
Helix 8
AA8
C
461 467Right-handed alpha
Helix 9
AA9
C
467 473Right-handed alpha
Helix 10
AB1
C
489 501Right-handed alpha
Helix 11
AB2
A
10 27Right-handed alpha
Helix 12
AB3
A
71 81Right-handed alpha
Helix 13
AB4
A
83 87Right-handed 310
Helix 14
AB5
A
102 108Right-handed alpha
Helix 15
AB6
A
108 129Right-handed alpha
Helix 16
AB7
A
147 161Right-handed alpha
Helix 17
AB8
A
182 195Right-handed alpha
Helix 18
AB9
A
206 216Right-handed alpha
Helix 19
AC1
A
223 239Right-handed alpha
Helix 20
AC2
A
239 244Right-handed alpha
Helix 21
AC3
A
251 260Right-handed alpha
Helix 22
AC4
A
287 294Right-handed alpha
Helix 23
AC5
A
295 296Right-handed 310
Helix 24
AC6
A
297 301Right-handed 310
Helix 25
AC7
A
324 337Right-handed alpha
Helix 26
AC8
A
383 400Right-handed alpha
Helix 27
AC9
A
401 404Right-handed 310
Helix 28
AD1
A
405 410Right-handed alpha
Helix 29
AD2
A
414 435Right-handed alpha
Helix 30
AD3
B
10 27Right-handed alpha
Helix 31
AD4
B
48 51Right-handed 310
Helix 32
AD5
B
71 79Right-handed alpha
Helix 33
AD6
B
82 87Right-handed 310
Helix 34
AD7
B
88 90Right-handed 310
Helix 35
AD8
B
109 127Right-handed alpha
Helix 36
AD9
B
143 148Right-handed alpha
Helix 37
AE1
B
148 161Right-handed alpha
Helix 38
AE2
B
182 195Right-handed alpha
Helix 39
AE3
B
206 216Right-handed alpha
Helix 40
AE4
B
223 239Right-handed alpha
Helix 41
AE5
B
240 244Right-handed 310
Helix 42
AE6
B
251 260Right-handed alpha
Helix 43
AE7
B
288 296Right-handed alpha
Helix 44
AE8
B
306 310Right-handed 310
Helix 45
AE9
B
324 339Right-handed alpha
Helix 46
AF1
B
340 343Right-handed 310
Helix 47
AF2
B
384 400Right-handed alpha
Helix 48
AF3
B
404 410Right-handed alpha
Helix 49
AF4
B
414 437Right-handed alpha
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There are 8 sheets in PDB entry 5ND2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
124 126first strand
Strand 2
C
65 70parallel
Strand 3
C
477 483parallel
Strand 4
C
152 159parallel
Strand 5
C
399 407parallel
Strand 6
C
380 389anti-parallel
Strand 7
C
298 308anti-parallel
Strand 8
C
311 314anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
124 126first strand
Strand 2
C
65 70parallel
Strand 3
C
477 483parallel
Strand 4
C
152 159parallel
Strand 5
C
399 407parallel
Strand 6
C
380 389anti-parallel
Strand 7
C
298 308anti-parallel
Strand 8
C
346 347anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
87 90first strand
Strand 2
C
94 98anti-parallel
Strand 3
C
117 121anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
329 332first strand
Strand 2
C
338 341anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
92 94first strand
Strand 2
A
65 69parallel
Strand 3
A
3 9parallel
Strand 4
A
132 139parallel
Strand 5
A
165 172parallel
Strand 6
A
200 205parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
269 271first strand
Strand 2
A
373 381anti-parallel
Strand 3
A
312 321anti-parallel
Strand 4
A
351 356parallel
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There are 10 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
92 94first strand
Strand 2
B
65 69parallel
Strand 3
B
3 9parallel
Strand 4
B
132 140parallel
Strand 5
B
165 172parallel
Strand 6
B
200 205parallel
Strand 7
B
267 272parallel
Strand 8
B
374 381anti-parallel
Strand 9
B
312 320anti-parallel
Strand 10
B
351 356parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
53 54first strand
Strand 2
B
62 63anti-parallel
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