Analysis of interatomic Contacts of Structural Units in PDB entry:
5ND3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5ND3 entry

There are 3 chains in PDB entry 5ND3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
C
 SER 61ALA 503
A
 ARG 2SER 439
B
 ARG 2ASP 437
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 44 helices in PDB entry 5ND3. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
C
74 81Right-handed alpha
Helix 2
AA2
C
131 139Right-handed alpha
Helix 3
AA3
C
139 149Right-handed alpha
Helix 4
AA4
C
164 170Right-handed alpha
Helix 5
AA5
C
177 189Right-handed alpha
Helix 6
AA6
C
350 364Right-handed alpha
Helix 7
AA7
C
424 449Right-handed alpha
Helix 8
AA8
C
456 460Right-handed 310
Helix 9
AA9
C
461 473Right-handed alpha
Helix 10
AB1
C
489 501Right-handed alpha
Helix 11
AB2
A
10 28Right-handed alpha
Helix 12
AB3
A
71 79Right-handed alpha
Helix 13
AB4
A
88 90Right-handed 310
Helix 14
AB5
A
110 129Right-handed alpha
Helix 15
AB6
A
144 161Right-handed alpha
Helix 16
AB7
A
182 194Right-handed alpha
Helix 17
AB8
A
195 197Right-handed 310
Helix 18
AB9
A
206 216Right-handed alpha
Helix 19
AC1
A
223 239Right-handed alpha
Helix 20
AC2
A
251 260Right-handed alpha
Helix 21
AC3
A
287 294Right-handed alpha
Helix 22
AC4
A
295 301Right-handed 310
Helix 23
AC5
A
324 337Right-handed alpha
Helix 24
AC6
A
383 401Right-handed alpha
Helix 25
AC7
A
402 404Right-handed 310
Helix 26
AC8
A
405 410Right-handed alpha
Helix 27
AC9
A
414 436Right-handed alpha
Helix 28
AD1
B
10 29Right-handed alpha
Helix 29
AD2
B
43 51Right-handed 310
Helix 30
AD3
B
71 79Right-handed alpha
Helix 31
AD4
B
109 127Right-handed alpha
Helix 32
AD5
B
143 161Right-handed alpha
Helix 33
AD6
B
182 198Right-handed alpha
Helix 34
AD7
B
206 216Right-handed alpha
Helix 35
AD8
B
223 236Right-handed alpha
Helix 36
AD9
B
240 244Right-handed 310
Helix 37
AE1
B
251 257Right-handed alpha
Helix 38
AE2
B
288 296Right-handed alpha
Helix 39
AE3
B
306 310Right-handed 310
Helix 40
AE4
B
324 339Right-handed alpha
Helix 41
AE5
B
340 343Right-handed 310
Helix 42
AE6
B
384 400Right-handed alpha
Helix 43
AE7
B
405 412Right-handed alpha
Helix 44
AE8
B
414 437Right-handed alpha
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There are 9 sheets in PDB entry 5ND3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
124 126first strand
Strand 2
C
65 70parallel
Strand 3
C
475 483parallel
Strand 4
C
152 158parallel
Strand 5
C
400 408parallel
Strand 6
C
380 390anti-parallel
Strand 7
C
297 308anti-parallel
Strand 8
C
311 314anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
87 90first strand
Strand 2
C
94 99anti-parallel
Strand 3
C
116 121anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
330 332first strand
Strand 2
C
338 340anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
92 94first strand
Strand 2
A
65 69parallel
Strand 3
A
4 9parallel
Strand 4
A
134 140parallel
Strand 5
A
165 172parallel
Strand 6
A
200 201parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
92 94first strand
Strand 2
A
65 69parallel
Strand 3
A
4 9parallel
Strand 4
A
134 140parallel
Strand 5
A
165 172parallel
Strand 6
A
204 205parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
269 271first strand
Strand 2
A
373 380anti-parallel
Strand 3
A
314 321anti-parallel
Strand 4
A
351 355parallel
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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
92 94first strand
Strand 2
B
65 69parallel
Strand 3
B
3 9parallel
Strand 4
B
132 140parallel
Strand 5
B
165 172parallel
Strand 6
B
200 205parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
53 54first strand
Strand 2
B
62 63anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
269 272first strand
Strand 2
B
375 381anti-parallel
Strand 3
B
312 320anti-parallel
Strand 4
B
351 356parallel
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