Analysis of interatomic Contacts of Structural Units in PDB entry:
5ND4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5ND4 entry

There are 3 chains in PDB entry 5ND4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
C
 SER 61HIS 508
A
 ARG 2SER 439
B
 ARG 2ASP 437
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 46 helices in PDB entry 5ND4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
C
74 81Right-handed alpha
Helix 2
AA2
C
131 150Right-handed alpha
Helix 3
AA3
C
164 170Right-handed alpha
Helix 4
AA4
C
177 190Right-handed alpha
Helix 5
AA5
C
350 365Right-handed alpha
Helix 6
AA6
C
413 418Right-handed alpha
Helix 7
AA7
C
420 449Right-handed alpha
Helix 8
AA8
C
456 460Right-handed 310
Helix 9
AA9
C
461 472Right-handed alpha
Helix 10
AB1
C
489 506Right-handed alpha
Helix 11
AB2
A
10 27Right-handed alpha
Helix 12
AB3
A
71 76Right-handed alpha
Helix 13
AB4
A
76 81Right-handed alpha
Helix 14
AB5
A
102 108Right-handed alpha
Helix 15
AB6
A
108 129Right-handed alpha
Helix 16
AB7
A
147 161Right-handed alpha
Helix 17
AB8
A
182 196Right-handed alpha
Helix 18
AB9
A
206 216Right-handed alpha
Helix 19
AC1
A
223 239Right-handed alpha
Helix 20
AC2
A
251 260Right-handed alpha
Helix 21
AC3
A
287 292Right-handed alpha
Helix 22
AC4
A
293 296Right-handed 310
Helix 23
AC5
A
297 301Right-handed 310
Helix 24
AC6
A
324 337Right-handed alpha
Helix 25
AC7
A
384 400Right-handed alpha
Helix 26
AC8
A
401 404Right-handed 310
Helix 27
AC9
A
405 410Right-handed alpha
Helix 28
AD1
A
414 430Right-handed alpha
Helix 29
AD2
A
430 435Right-handed alpha
Helix 30
AD3
B
10 27Right-handed alpha
Helix 31
AD4
B
48 53Right-handed 310
Helix 32
AD5
B
71 79Right-handed alpha
Helix 33
AD6
B
82 87Right-handed 310
Helix 34
AD7
B
88 90Right-handed 310
Helix 35
AD8
B
110 127Right-handed alpha
Helix 36
AD9
B
143 161Right-handed alpha
Helix 37
AE1
B
182 195Right-handed alpha
Helix 38
AE2
B
206 216Right-handed alpha
Helix 39
AE3
B
223 243Right-handed alpha
Helix 40
AE4
B
251 260Right-handed alpha
Helix 41
AE5
B
288 296Right-handed alpha
Helix 42
AE6
B
306 310Right-handed 310
Helix 43
AE7
B
324 339Right-handed alpha
Helix 44
AE8
B
384 400Right-handed alpha
Helix 45
AE9
B
405 410Right-handed alpha
Helix 46
AF1
B
414 435Right-handed alpha
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There are 8 sheets in PDB entry 5ND4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
124 126first strand
Strand 2
C
65 70parallel
Strand 3
C
476 483parallel
Strand 4
C
153 159parallel
Strand 5
C
399 407parallel
Strand 6
C
380 390anti-parallel
Strand 7
C
297 308anti-parallel
Strand 8
C
311 314anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
124 126first strand
Strand 2
C
65 70parallel
Strand 3
C
476 483parallel
Strand 4
C
153 159parallel
Strand 5
C
399 407parallel
Strand 6
C
380 390anti-parallel
Strand 7
C
297 308anti-parallel
Strand 8
C
346 347anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
87 90first strand
Strand 2
C
94 100anti-parallel
Strand 3
C
115 121anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
329 331first strand
Strand 2
C
339 341anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
92 94first strand
Strand 2
A
65 69parallel
Strand 3
A
5 9parallel
Strand 4
A
135 139parallel
Strand 5
A
167 170parallel
Strand 6
A
200 203parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
351 355first strand
Strand 2
A
312 321parallel
Strand 3
A
373 381anti-parallel
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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
92 94first strand
Strand 2
B
65 69parallel
Strand 3
B
3 9parallel
Strand 4
B
132 140parallel
Strand 5
B
165 172parallel
Strand 6
B
200 205parallel
Strand 7
B
267 268parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
270 271first strand
Strand 2
B
374 381anti-parallel
Strand 3
B
312 320anti-parallel
Strand 4
B
351 356parallel
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