Analysis of interatomic Contacts of Structural Units in PDB entry:
5ND5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5ND5 entry

There are 2 chains in PDB entry 5ND5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 49GLN 717
B
 SER 49GLN 717
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 63 helices in PDB entry 5ND5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
51 74Right-handed alpha
Helix 2
AA2
A
78 94Right-handed alpha
Helix 3
AA3
A
115 117Right-handed 310
Helix 4
AA4
A
118 130Right-handed alpha
Helix 5
AA5
A
135 140Right-handed alpha
Helix 6
AA6
A
169 190Right-handed alpha
Helix 7
AA7
A
207 213Right-handed alpha
Helix 8
AA8
A
213 226Right-handed alpha
Helix 9
AA9
A
247 249Right-handed 310
Helix 10
AB1
A
253 261Right-handed alpha
Helix 11
AB2
A
274 288Right-handed alpha
Helix 12
AB3
A
311 315Right-handed 310
Helix 13
AB4
A
320 331Right-handed alpha
Helix 14
AB5
A
341 349Right-handed alpha
Helix 15
AB6
A
350 373Right-handed alpha
Helix 16
AB7
A
373 385Right-handed alpha
Helix 17
AB8
A
391 396Right-handed 310
Helix 18
AB9
A
408 420Right-handed alpha
Helix 19
AC1
A
433 438Right-handed alpha
Helix 20
AC2
A
462 476Right-handed alpha
Helix 21
AC3
A
489 493Right-handed 310
Helix 22
AC4
A
494 505Right-handed alpha
Helix 23
AC5
A
516 520Right-handed 310
Helix 24
AC6
A
530 537Right-handed alpha
Helix 25
AC7
A
547 562Right-handed alpha
Helix 26
AC8
A
583 589Right-handed alpha
Helix 27
AC9
A
613 627Right-handed alpha
Helix 28
AD1
A
638 644Right-handed alpha
Helix 29
AD2
A
646 654Right-handed alpha
Helix 30
AD3
A
672 677Right-handed alpha
Helix 31
AD4
A
693 701Right-handed alpha
Helix 32
AD5
A
704 716Right-handed alpha
Helix 33
AD6
B
51 74Right-handed alpha
Helix 34
AD7
B
78 95Right-handed alpha
Helix 35
AD8
B
115 117Right-handed 310
Helix 36
AD9
B
118 130Right-handed alpha
Helix 37
AE1
B
135 140Right-handed alpha
Helix 38
AE2
B
169 190Right-handed alpha
Helix 39
AE3
B
207 213Right-handed alpha
Helix 40
AE4
B
213 226Right-handed alpha
Helix 41
AE5
B
247 249Right-handed 310
Helix 42
AE6
B
253 261Right-handed alpha
Helix 43
AE7
B
274 288Right-handed alpha
Helix 44
AE8
B
311 315Right-handed 310
Helix 45
AE9
B
320 331Right-handed alpha
Helix 46
AF1
B
341 349Right-handed alpha
Helix 47
AF2
B
349 373Right-handed alpha
Helix 48
AF3
B
373 385Right-handed alpha
Helix 49
AF4
B
391 396Right-handed 310
Helix 50
AF5
B
407 420Right-handed alpha
Helix 51
AF6
B
433 438Right-handed alpha
Helix 52
AF7
B
462 476Right-handed alpha
Helix 53
AF8
B
490 505Right-handed alpha
Helix 54
AF9
B
516 520Right-handed 310
Helix 55
AG1
B
530 537Right-handed alpha
Helix 56
AG2
B
547 562Right-handed alpha
Helix 57
AG3
B
583 590Right-handed alpha
Helix 58
AG4
B
613 627Right-handed alpha
Helix 59
AG5
B
638 644Right-handed alpha
Helix 60
AG6
B
646 654Right-handed alpha
Helix 61
AG7
B
672 677Right-handed alpha
Helix 62
AG8
B
693 701Right-handed alpha
Helix 63
AG9
B
704 716Right-handed alpha
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There are 9 sheets in PDB entry 5ND5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
110 113first strand
Strand 2
A
202 206parallel
Strand 3
A
231 237parallel
Strand 4
A
293 298parallel
Strand 5
A
264 268parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
240 241first strand
Strand 2
A
244 245anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
406 407first strand
Strand 2
A
575 576anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
426 430first strand
Strand 2
A
481 487parallel
Strand 3
A
509 513parallel
Strand 4
A
567 570parallel
Strand 5
A
542 544parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
592 596first strand
Strand 2
A
631 635anti-parallel
Strand 3
A
605 609parallel
Strand 4
A
661 664parallel
Strand 5
A
681 683parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
110 113first strand
Strand 2
B
202 206parallel
Strand 3
B
231 237parallel
Strand 4
B
293 298parallel
Strand 5
B
264 268parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
240 241first strand
Strand 2
B
244 245anti-parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
426 430first strand
Strand 2
B
481 487parallel
Strand 3
B
509 513parallel
Strand 4
B
567 570parallel
Strand 5
B
542 544parallel
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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
592 596first strand
Strand 2
B
631 635anti-parallel
Strand 3
B
605 609parallel
Strand 4
B
661 664parallel
Strand 5
B
681 683parallel
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