Analysis of interatomic Contacts of Structural Units in PDB entry:
5NDY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5NDY entry

There are 6 chains in PDB entry 5NDY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LEU 249
B
 PHE 2LEU 249
C
 MET 1SER 247
D
 MET 1SER 247
E
 PHE 2VAL 248
F
 MET 1VAL 248
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 68 helices in PDB entry 5NDY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
5 15Right-handed alpha
Helix 2
AA2
A
25 29Right-handed 310
Helix 3
AA3
A
30 44Right-handed alpha
Helix 4
AA4
A
57 72Right-handed alpha
Helix 5
AA5
A
82 86Right-handed 310
Helix 6
AA6
A
103 108Right-handed alpha
Helix 7
AA7
A
108 122Right-handed alpha
Helix 8
AA8
A
136 143Right-handed alpha
Helix 9
AA9
A
152 166Right-handed alpha
Helix 10
AB1
A
184 195Right-handed alpha
Helix 11
AB2
A
207 217Right-handed alpha
Helix 12
AB3
A
236 247Right-handed alpha
Helix 13
AB4
B
5 15Right-handed alpha
Helix 14
AB5
B
30 45Right-handed alpha
Helix 15
AB6
B
58 70Right-handed alpha
Helix 16
AB7
B
82 86Right-handed 310
Helix 17
AB8
B
103 108Right-handed alpha
Helix 18
AB9
B
108 121Right-handed alpha
Helix 19
AC1
B
136 143Right-handed alpha
Helix 20
AC2
B
152 167Right-handed alpha
Helix 21
AC3
B
184 195Right-handed alpha
Helix 22
AC4
B
207 218Right-handed alpha
Helix 23
AC5
B
234 247Right-handed alpha
Helix 24
AC6
C
5 15Right-handed alpha
Helix 25
AC7
C
25 29Right-handed 310
Helix 26
AC8
C
30 45Right-handed alpha
Helix 27
AC9
C
57 72Right-handed alpha
Helix 28
AD1
C
82 86Right-handed 310
Helix 29
AD2
C
103 108Right-handed alpha
Helix 30
AD3
C
108 121Right-handed alpha
Helix 31
AD4
C
136 143Right-handed alpha
Helix 32
AD5
C
152 167Right-handed alpha
Helix 33
AD6
C
184 195Right-handed alpha
Helix 34
AD7
C
207 218Right-handed alpha
Helix 35
AD8
C
235 247Right-handed alpha
Helix 36
AD9
D
5 15Right-handed alpha
Helix 37
AE1
D
30 44Right-handed alpha
Helix 38
AE2
D
58 70Right-handed alpha
Helix 39
AE3
D
82 86Right-handed 310
Helix 40
AE4
D
103 108Right-handed alpha
Helix 41
AE5
D
108 122Right-handed alpha
Helix 42
AE6
D
136 143Right-handed alpha
Helix 43
AE7
D
152 167Right-handed alpha
Helix 44
AE8
D
184 195Right-handed alpha
Helix 45
AE9
D
207 218Right-handed alpha
Helix 46
AF1
D
238 245Right-handed alpha
Helix 47
AF2
E
5 15Right-handed alpha
Helix 48
AF3
E
30 44Right-handed alpha
Helix 49
AF4
E
57 70Right-handed alpha
Helix 50
AF5
E
82 86Right-handed 310
Helix 51
AF6
E
103 108Right-handed alpha
Helix 52
AF7
E
108 121Right-handed alpha
Helix 53
AF8
E
136 143Right-handed alpha
Helix 54
AF9
E
152 166Right-handed alpha
Helix 55
AG1
E
184 195Right-handed alpha
Helix 56
AG2
E
207 217Right-handed alpha
Helix 57
AG3
E
237 245Right-handed alpha
Helix 58
AG4
F
5 15Right-handed alpha
Helix 59
AG5
F
30 44Right-handed alpha
Helix 60
AG6
F
57 70Right-handed alpha
Helix 61
AG7
F
82 86Right-handed 310
Helix 62
AG8
F
103 108Right-handed alpha
Helix 63
AG9
F
108 122Right-handed alpha
Helix 64
AH1
F
136 143Right-handed alpha
Helix 65
AH2
F
152 167Right-handed alpha
Helix 66
AH3
F
184 195Right-handed alpha
Helix 67
AH4
F
207 218Right-handed alpha
Helix 68
AH5
F
238 246Right-handed alpha
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There are 6 sheets in PDB entry 5NDY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
19 24first strand
Strand 2
A
48 51parallel
Strand 3
A
76 78parallel
Strand 4
A
92 98parallel
Strand 5
A
124 132parallel
Strand 6
A
170 174parallel
Strand 7
A
198 202parallel
Strand 8
A
221 224parallel
Strand 9
A
19 24parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
19 24first strand
Strand 2
B
49 52parallel
Strand 3
B
76 79parallel
Strand 4
B
92 98parallel
Strand 5
B
124 132parallel
Strand 6
B
170 174parallel
Strand 7
B
198 202parallel
Strand 8
B
221 224parallel
Strand 9
B
19 24parallel
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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
19 24first strand
Strand 2
C
49 52parallel
Strand 3
C
76 79parallel
Strand 4
C
92 98parallel
Strand 5
C
124 132parallel
Strand 6
C
170 174parallel
Strand 7
C
198 202parallel
Strand 8
C
221 224parallel
Strand 9
C
19 24parallel
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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
19 24first strand
Strand 2
D
48 52parallel
Strand 3
D
76 79parallel
Strand 4
D
92 98parallel
Strand 5
D
124 132parallel
Strand 6
D
170 174parallel
Strand 7
D
198 202parallel
Strand 8
D
221 224parallel
Strand 9
D
19 24parallel
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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
19 24first strand
Strand 2
E
48 52parallel
Strand 3
E
76 79parallel
Strand 4
E
92 98parallel
Strand 5
E
124 132parallel
Strand 6
E
170 174parallel
Strand 7
E
198 202parallel
Strand 8
E
221 224parallel
Strand 9
E
19 24parallel
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There are 9 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
19 24first strand
Strand 2
F
49 52parallel
Strand 3
F
76 79parallel
Strand 4
F
92 98parallel
Strand 5
F
124 132parallel
Strand 6
F
170 174parallel
Strand 7
F
198 202parallel
Strand 8
F
221 224parallel
Strand 9
F
19 24parallel
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