Analysis of interatomic Contacts of Structural Units in PDB entry:
5NE3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5NE3 entry

There are 2 chains in PDB entry 5NE3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 21GLY 289
B
 ALA 21GLY 289
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 5NE3. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
21 30Right-handed alpha
Helix 2
AA2
A
32 40Right-handed alpha
Helix 3
AA3
A
68 70Right-handed 310
Helix 4
AA4
A
71 86Right-handed alpha
Helix 5
AA5
A
88 91Right-handed 310
Helix 6
AA6
A
97 101Right-handed 310
Helix 7
AA7
A
107 112Right-handed 310
Helix 8
AA8
A
118 128Right-handed alpha
Helix 9
AA9
A
130 142Right-handed alpha
Helix 10
AB1
A
142 155Right-handed alpha
Helix 11
AB2
A
166 170Right-handed 310
Helix 12
AB3
A
181 194Right-handed alpha
Helix 13
AB4
A
199 212Right-handed alpha
Helix 14
AB5
A
219 224Right-handed alpha
Helix 15
AB6
A
269 289Right-handed alpha
Helix 16
AB7
B
22 30Right-handed alpha
Helix 17
AB8
B
32 41Right-handed alpha
Helix 18
AB9
B
68 70Right-handed 310
Helix 19
AC1
B
71 86Right-handed alpha
Helix 20
AC2
B
88 91Right-handed 310
Helix 21
AC3
B
97 101Right-handed 310
Helix 22
AC4
B
107 112Right-handed 310
Helix 23
AC5
B
118 128Right-handed alpha
Helix 24
AC6
B
130 142Right-handed alpha
Helix 25
AC7
B
143 155Right-handed alpha
Helix 26
AC8
B
166 170Right-handed 310
Helix 27
AC9
B
181 194Right-handed alpha
Helix 28
AD1
B
199 212Right-handed alpha
Helix 29
AD2
B
219 224Right-handed alpha
Helix 30
AD3
B
269 289Right-handed alpha
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There are 6 sheets in PDB entry 5NE3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
56 59first strand
Strand 2
A
43 50anti-parallel
Strand 3
A
257 264anti-parallel
Strand 4
A
241 250anti-parallel
Strand 5
A
228 236anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
65 66first strand
Strand 2
A
179 180anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
93 95first strand
Strand 2
A
115 117anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
56 59first strand
Strand 2
B
43 50anti-parallel
Strand 3
B
257 264anti-parallel
Strand 4
B
241 250anti-parallel
Strand 5
B
228 236anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
65 66first strand
Strand 2
B
179 180anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
93 95first strand
Strand 2
B
115 117anti-parallel
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