Analysis of interatomic Contacts of Structural Units in PDB entry:
5NEV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5NEV entry


Note, this PDB entry contains modified residue(s) PHOSPHOTHREONINE (TPO) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 6 chains in PDB entry 5NEV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 0TYR 159
A
 HIS 161HIS 295
B
 VAL 175THR 429
C
 SER 0TYR 159
C
 HIS 161LEU 296
D
 VAL 175THR 429
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 60 helices in PDB entry 5NEV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
45 57Right-handed alpha
Helix 2
AA2
A
87 94Right-handed alpha
Helix 3
AA3
A
100 121Right-handed alpha
Helix 4
AA4
A
129 131Right-handed 310
Helix 5
AA5
A
145 149Right-handed 310
Helix 6
AA6
A
165 169Right-handed 310
Helix 7
AA7
A
170 175Right-handed alpha
Helix 8
AA8
A
182 199Right-handed alpha
Helix 9
AA9
A
207 220Right-handed alpha
Helix 10
AB1
A
229 233Right-handed 310
Helix 11
AB2
A
247 252Right-handed alpha
Helix 12
AB3
A
256 267Right-handed alpha
Helix 13
AB4
A
276 281Right-handed alpha
Helix 14
AB5
A
282 287Right-handed 310
Helix 15
AB6
B
178 193Right-handed alpha
Helix 16
AB7
B
198 203Right-handed alpha
Helix 17
AB8
B
207 225Right-handed alpha
Helix 18
AB9
B
228 246Right-handed alpha
Helix 19
AC1
B
249 269Right-handed alpha
Helix 20
AC2
B
274 282Right-handed alpha
Helix 21
AC3
B
287 302Right-handed alpha
Helix 22
AC4
B
310 319Right-handed alpha
Helix 23
AC5
B
320 322Right-handed 310
Helix 24
AC6
B
326 340Right-handed alpha
Helix 25
AC7
B
343 348Right-handed alpha
Helix 26
AC8
B
351 367Right-handed alpha
Helix 27
AC9
B
373 381Right-handed alpha
Helix 28
AD1
B
383 400Right-handed alpha
Helix 29
AD2
B
407 413Right-handed alpha
Helix 30
AD3
B
414 419Right-handed 310
Helix 31
AD4
C
45 57Right-handed alpha
Helix 32
AD5
C
87 94Right-handed alpha
Helix 33
AD6
C
100 120Right-handed alpha
Helix 34
AD7
C
129 131Right-handed 310
Helix 35
AD8
C
145 149Right-handed 310
Helix 36
AD9
C
165 169Right-handed 310
Helix 37
AE1
C
170 175Right-handed alpha
Helix 38
AE2
C
182 198Right-handed alpha
Helix 39
AE3
C
207 220Right-handed alpha
Helix 40
AE4
C
229 233Right-handed 310
Helix 41
AE5
C
247 252Right-handed alpha
Helix 42
AE6
C
256 267Right-handed alpha
Helix 43
AE7
C
276 281Right-handed alpha
Helix 44
AE8
C
282 287Right-handed 310
Helix 45
AE9
D
178 193Right-handed alpha
Helix 46
AF1
D
198 203Right-handed alpha
Helix 47
AF2
D
207 225Right-handed alpha
Helix 48
AF3
D
228 246Right-handed alpha
Helix 49
AF4
D
249 269Right-handed alpha
Helix 50
AF5
D
274 282Right-handed alpha
Helix 51
AF6
D
287 302Right-handed alpha
Helix 52
AF7
D
310 319Right-handed alpha
Helix 53
AF8
D
320 322Right-handed 310
Helix 54
AF9
D
326 340Right-handed alpha
Helix 55
AG1
D
343 348Right-handed alpha
Helix 56
AG2
D
351 367Right-handed alpha
Helix 57
AG3
D
373 381Right-handed alpha
Helix 58
AG4
D
383 400Right-handed alpha
Helix 59
AG5
D
407 413Right-handed alpha
Helix 60
AG6
D
414 419Right-handed 310
Back to top of page

There are 6 sheets in PDB entry 5NEV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 13first strand
Strand 2
A
16 23anti-parallel
Strand 3
A
29 36anti-parallel
Strand 4
A
75 81anti-parallel
Strand 5
A
66 71anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
85 86first strand
Strand 2
A
133 135anti-parallel
Strand 3
A
141 143anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
123 124first strand
Strand 2
A
150 151anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
4 12first strand
Strand 2
C
17 23anti-parallel
Strand 3
C
29 36anti-parallel
Strand 4
C
75 81anti-parallel
Strand 5
C
66 71anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
85 86first strand
Strand 2
C
133 135anti-parallel
Strand 3
C
141 143anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
123 124first strand
Strand 2
C
150 151anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il