Analysis of interatomic Contacts of Structural Units in PDB entry:
5NF2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5NF2 entry

There is 1 chain in PDB entry 5NF2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 64LEU 563
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 5NF2. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
65 69Right-handed 310
Helix 2
AA2
A
97 101Right-handed alpha
Helix 3
AA3
A
123 127Right-handed 310
Helix 4
AA4
A
142 149Right-handed alpha
Helix 5
AA5
A
152 160Right-handed alpha
Helix 6
AA6
A
175 179Right-handed 310
Helix 7
AA7
A
185 188Right-handed 310
Helix 8
AA8
A
310 316Right-handed alpha
Helix 9
AA9
A
322 327Right-handed 310
Helix 10
AB1
A
344 349Right-handed 310
Helix 11
AB2
A
353 361Right-handed alpha
Helix 12
AB3
A
399 402Right-handed 310
Helix 13
AB4
A
435 440Right-handed alpha
Helix 14
AB5
A
441 445Right-handed 310
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There are 10 sheets in PDB entry 5NF2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
71 72first strand
Strand 2
A
197 200parallel
Strand 3
A
190 193anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
90 96first strand
Strand 2
A
75 82anti-parallel
Strand 3
A
130 137anti-parallel
Strand 4
A
202 203anti-parallel
Strand 5
A
231 236anti-parallel
Strand 6
A
559 562anti-parallel
Strand 7
A
112 115parallel
Strand 8
A
105 107anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
90 96first strand
Strand 2
A
75 82anti-parallel
Strand 3
A
130 137anti-parallel
Strand 4
A
211 212anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
163 165first strand
Strand 2
A
283 285anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
363 365first strand
Strand 2
A
239 245anti-parallel
Strand 3
A
486 494parallel
Strand 4
A
545 552anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
250 253first strand
Strand 2
A
266 278anti-parallel
Strand 3
A
339 340anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
250 253first strand
Strand 2
A
266 278anti-parallel
Strand 3
A
388 397anti-parallel
Strand 4
A
459 465anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
280 281first strand
Strand 2
A
320 321anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
289 290first strand
Strand 2
A
298 299anti-parallel
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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
432 433first strand
Strand 2
A
424 427anti-parallel
Strand 3
A
452 455anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il