Analysis of interatomic Contacts of Structural Units in PDB entry:
5NF4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5NF4 entry

There are 2 chains in PDB entry 5NF4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 34TRP 341
B
 PRO 34TRP 341
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 5NF4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
59 63Right-handed 310
Helix 2
AA2
A
116 122Right-handed alpha
Helix 3
AA3
A
126 136Right-handed alpha
Helix 4
AA4
A
141 146Right-handed 310
Helix 5
AA5
A
178 182Right-handed 310
Helix 6
AA6
A
201 203Right-handed 310
Helix 7
AA7
A
298 304Right-handed alpha
Helix 8
AA8
B
59 63Right-handed 310
Helix 9
AA9
B
116 122Right-handed alpha
Helix 10
AB1
B
126 136Right-handed alpha
Helix 11
AB2
B
141 146Right-handed 310
Helix 12
AB3
B
178 182Right-handed 310
Helix 13
AB4
B
201 203Right-handed 310
Helix 14
AB5
B
298 304Right-handed alpha
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There are 11 sheets in PDB entry 5NF4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
79 86first strand
Strand 2
A
66 73anti-parallel
Strand 3
A
104 112anti-parallel
Strand 4
A
156 165anti-parallel
Strand 5
A
185 189anti-parallel
Strand 6
A
36 44parallel
Strand 7
A
94 101anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
79 86first strand
Strand 2
A
66 73anti-parallel
Strand 3
A
104 112anti-parallel
Strand 4
A
156 165anti-parallel
Strand 5
A
185 189anti-parallel
Strand 6
A
36 44parallel
Strand 7
A
175 176parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
138 139first strand
Strand 2
A
216 217anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
236 237first strand
Strand 2
A
243 249anti-parallel
Strand 3
A
191 200anti-parallel
Strand 4
A
319 327parallel
Strand 5
A
332 340anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
233 234first strand
Strand 2
A
205 211anti-parallel
Strand 3
A
272 277anti-parallel
Strand 4
A
282 286anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
95 101first strand
Strand 2
B
36 43anti-parallel
Strand 3
B
175 176parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
95 101first strand
Strand 2
B
36 43anti-parallel
Strand 3
B
185 186parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
79 86first strand
Strand 2
B
66 73anti-parallel
Strand 3
B
104 112anti-parallel
Strand 4
B
156 165anti-parallel
Strand 5
B
188 189anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
138 139first strand
Strand 2
B
216 217anti-parallel
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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
236 237first strand
Strand 2
B
243 249anti-parallel
Strand 3
B
191 200anti-parallel
Strand 4
B
319 328parallel
Strand 5
B
331 340anti-parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
233 234first strand
Strand 2
B
205 211anti-parallel
Strand 3
B
272 277anti-parallel
Strand 4
B
282 286anti-parallel
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