Analysis of interatomic Contacts of Structural Units in PDB entry:
5NFF

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5NFF entry

There are 9 chains in PDB entry 5NFF (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	THR 80	SER 235
A	THR 80	SER 235
C	THR 80	SER 235
D	THR 80	SER 235
E	THR 80	SER 235
F	THR 80	SER 235
G	THR 80	SER 235
H	THR 80	SER 235
I	THR 80	LEU 83

There are 52 helices in PDB entry 5NFF. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	121	139	Right-handed alpha
Helix 2	AA2	B	171	178	Right-handed alpha
Helix 3	AA3	B	181	193	Right-handed alpha
Helix 4	AA4	A	121	140	Right-handed alpha
Helix 5	AA5	A	171	178	Right-handed alpha
Helix 6	AA6	A	181	193	Right-handed alpha
Helix 7	AA7	C	121	139	Right-handed alpha
Helix 8	AA8	C	171	178	Right-handed alpha
Helix 9	AA9	C	181	194	Right-handed alpha
Helix 10	AB1	D	121	139	Right-handed alpha
Helix 11	AB2	D	171	178	Right-handed alpha
Helix 12	AB3	D	181	193	Right-handed alpha
Helix 13	AB4	E	121	139	Right-handed alpha
Helix 14	AB5	E	171	178	Right-handed alpha
Helix 15	AB6	E	181	193	Right-handed alpha
Helix 16	AB7	E	226	228	Right-handed 310
Helix 17	AB8	F	121	139	Right-handed alpha
Helix 18	AB9	F	171	178	Right-handed alpha
Helix 19	AC1	F	181	193	Right-handed alpha
Helix 20	AC2	G	121	139	Right-handed alpha
Helix 21	AC3	G	171	178	Right-handed alpha
Helix 22	AC4	G	181	193	Right-handed alpha
Helix 23	AC5	H	121	139	Right-handed alpha
Helix 24	AC6	H	171	178	Right-handed alpha
Helix 25	AC7	H	181	193	Right-handed alpha
Helix 26	AC8	I	121	139	Right-handed alpha
Helix 27	AC9	I	171	178	Right-handed alpha
Helix 28	AD1	I	181	193	Right-handed alpha
Helix 29	AD2	I	226	228	Right-handed 310
Helix 30	AD3	J	121	140	Right-handed alpha
Helix 31	AD4	J	171	178	Right-handed alpha
Helix 32	AD5	J	181	193	Right-handed alpha
Helix 33	AD6	J	226	228	Right-handed 310
Helix 34	AD7	K	121	140	Right-handed alpha
Helix 35	AD8	K	171	178	Right-handed alpha
Helix 36	AD9	K	181	194	Right-handed alpha
Helix 37	AE1	L	121	139	Right-handed alpha
Helix 38	AE2	L	171	178	Right-handed alpha
Helix 39	AE3	L	181	193	Right-handed alpha
Helix 40	AE4	M	121	140	Right-handed alpha
Helix 41	AE5	M	171	178	Right-handed alpha
Helix 42	AE6	M	181	193	Right-handed alpha
Helix 43	AE7	N	121	140	Right-handed alpha
Helix 44	AE8	N	171	178	Right-handed alpha
Helix 45	AE9	N	181	193	Right-handed alpha
Helix 46	AF1	O	121	140	Right-handed alpha
Helix 47	AF2	O	171	178	Right-handed alpha
Helix 48	AF3	O	181	193	Right-handed alpha
Helix 49	AF4	O	226	228	Right-handed 310
Helix 50	AF5	P	121	139	Right-handed alpha
Helix 51	AF6	P	171	177	Right-handed alpha
Helix 52	AF7	P	181	193	Right-handed alpha

There are 32 sheets in PDB entry 5NFF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	90	95	first strand
Strand 2	B	100	107	anti-parallel
Strand 3	B	217	224	anti-parallel
Strand 4	B	160	166	anti-parallel
Strand 5	B	152	157	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	200	205	first strand
Strand 2	B	208	212	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	90	95	first strand
Strand 2	A	100	107	anti-parallel
Strand 3	A	217	224	anti-parallel
Strand 4	A	160	166	anti-parallel
Strand 5	A	152	157	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	200	205	first strand
Strand 2	A	208	212	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	90	95	first strand
Strand 2	C	100	107	anti-parallel
Strand 3	C	217	224	anti-parallel
Strand 4	C	160	166	anti-parallel
Strand 5	C	152	157	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	200	205	first strand
Strand 2	C	208	212	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	90	95	first strand
Strand 2	D	100	107	anti-parallel
Strand 3	D	217	224	anti-parallel
Strand 4	D	160	166	anti-parallel
Strand 5	D	152	157	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	200	205	first strand
Strand 2	D	208	212	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	90	95	first strand
Strand 2	E	100	107	anti-parallel
Strand 3	E	217	224	anti-parallel
Strand 4	E	160	166	anti-parallel
Strand 5	E	152	157	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	200	205	first strand
Strand 2	E	208	212	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	90	95	first strand
Strand 2	F	100	107	anti-parallel
Strand 3	F	217	224	anti-parallel
Strand 4	F	160	166	anti-parallel
Strand 5	F	152	157	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	200	205	first strand
Strand 2	F	208	212	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	90	95	first strand
Strand 2	G	100	107	anti-parallel
Strand 3	G	217	224	anti-parallel
Strand 4	G	160	166	anti-parallel
Strand 5	G	152	157	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	200	205	first strand
Strand 2	G	208	212	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	90	95	first strand
Strand 2	H	100	107	anti-parallel
Strand 3	H	217	224	anti-parallel
Strand 4	H	160	166	anti-parallel
Strand 5	H	152	157	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	199	205	first strand
Strand 2	H	208	213	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	90	95	first strand
Strand 2	I	100	107	anti-parallel
Strand 3	I	217	224	anti-parallel
Strand 4	I	160	166	anti-parallel
Strand 5	I	152	157	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	200	205	first strand
Strand 2	I	208	212	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	90	95	first strand
Strand 2	J	100	107	anti-parallel
Strand 3	J	217	224	anti-parallel
Strand 4	J	160	166	anti-parallel
Strand 5	J	151	157	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	200	205	first strand
Strand 2	J	208	212	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	90	95	first strand
Strand 2	K	100	107	anti-parallel
Strand 3	K	217	224	anti-parallel
Strand 4	K	160	166	anti-parallel
Strand 5	K	152	157	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	200	205	first strand
Strand 2	K	208	212	anti-parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	90	95	first strand
Strand 2	L	100	107	anti-parallel
Strand 3	L	217	224	anti-parallel
Strand 4	L	160	166	anti-parallel
Strand 5	L	152	157	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	200	205	first strand
Strand 2	L	208	212	anti-parallel

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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	90	95	first strand
Strand 2	M	100	107	anti-parallel
Strand 3	M	217	224	anti-parallel
Strand 4	M	160	166	anti-parallel
Strand 5	M	152	157	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	200	205	first strand
Strand 2	M	208	212	anti-parallel

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There are 5 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	90	95	first strand
Strand 2	N	100	107	anti-parallel
Strand 3	N	217	224	anti-parallel
Strand 4	N	161	166	anti-parallel
Strand 5	N	152	156	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	200	205	first strand
Strand 2	N	208	212	anti-parallel

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There are 5 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	90	95	first strand
Strand 2	O	100	107	anti-parallel
Strand 3	O	217	224	anti-parallel
Strand 4	O	160	166	anti-parallel
Strand 5	O	152	157	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	200	205	first strand
Strand 2	O	208	212	anti-parallel

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There are 5 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	90	95	first strand
Strand 2	P	100	107	anti-parallel
Strand 3	P	217	224	anti-parallel
Strand 4	P	160	166	anti-parallel
Strand 5	P	152	157	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	200	205	first strand
Strand 2	P	208	212	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5NFF

Analysis of interatomic Contacts of Structural Units in PDB entry:
5NFF