Analysis of interatomic Contacts of Structural Units in PDB entry:
5NFG

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5NFG entry

There are 2 chains in PDB entry 5NFG (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 45	VAL 383
B	ARG 45	VAL 383

There are 20 helices in PDB entry 5NFG. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	96	102	Right-handed alpha
Helix 2	AA2	A	106	110	Right-handed 310
Helix 3	AA3	A	157	162	Right-handed alpha
Helix 4	AA4	A	174	178	Right-handed 310
Helix 5	AA5	A	184	193	Right-handed alpha
Helix 6	AA6	A	222	224	Right-handed 310
Helix 7	AA7	A	276	288	Right-handed alpha
Helix 8	AA8	A	304	308	Right-handed 310
Helix 9	AA9	A	323	327	Right-handed alpha
Helix 10	AB1	A	359	364	Right-handed alpha
Helix 11	AB2	B	96	102	Right-handed alpha
Helix 12	AB3	B	106	110	Right-handed 310
Helix 13	AB4	B	157	162	Right-handed alpha
Helix 14	AB5	B	174	178	Right-handed 310
Helix 15	AB6	B	184	192	Right-handed alpha
Helix 16	AB7	B	222	224	Right-handed 310
Helix 17	AB8	B	276	288	Right-handed alpha
Helix 18	AB9	B	304	308	Right-handed 310
Helix 19	AC1	B	323	327	Right-handed alpha
Helix 20	AC2	B	359	364	Right-handed alpha

There are 12 sheets in PDB entry 5NFG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	114	124	first strand
Strand 2	A	127	140	anti-parallel
Strand 3	A	61	68	anti-parallel
Strand 4	A	51	57	anti-parallel
Strand 5	A	214	218	anti-parallel
Strand 6	A	199	204	anti-parallel
Strand 7	A	366	371	anti-parallel
Strand 8	A	376	382	anti-parallel
Strand 9	A	226	234	anti-parallel

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There are 13 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	114	124	first strand
Strand 2	A	127	140	anti-parallel
Strand 3	A	143	156	anti-parallel
Strand 4	A	86	89	parallel
Strand 5	A	168	171	anti-parallel
Strand 6	A	73	80	parallel
Strand 7	A	61	68	anti-parallel
Strand 8	A	51	57	anti-parallel
Strand 9	A	214	218	anti-parallel
Strand 10	A	199	204	anti-parallel
Strand 11	A	366	371	anti-parallel
Strand 12	A	376	382	anti-parallel
Strand 13	A	226	234	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	242	245	first strand
Strand 2	A	262	266	anti-parallel
Strand 3	A	355	358	parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	253	254	first strand
Strand 2	A	249	250	anti-parallel
Strand 3	A	311	314	anti-parallel
Strand 4	A	319	322	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	273	275	first strand
Strand 2	A	343	345	parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	300	301	first strand
Strand 2	A	339	341	anti-parallel
Strand 3	A	328	330	anti-parallel

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There are 9 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	114	124	first strand
Strand 2	B	127	140	anti-parallel
Strand 3	B	61	68	anti-parallel
Strand 4	B	51	57	anti-parallel
Strand 5	B	214	218	anti-parallel
Strand 6	B	199	204	anti-parallel
Strand 7	B	366	371	anti-parallel
Strand 8	B	376	382	anti-parallel
Strand 9	B	226	234	anti-parallel

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There are 13 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	114	124	first strand
Strand 2	B	127	140	anti-parallel
Strand 3	B	143	156	anti-parallel
Strand 4	B	86	89	parallel
Strand 5	B	168	171	anti-parallel
Strand 6	B	73	80	parallel
Strand 7	B	61	68	anti-parallel
Strand 8	B	51	57	anti-parallel
Strand 9	B	214	218	anti-parallel
Strand 10	B	199	204	anti-parallel
Strand 11	B	366	371	anti-parallel
Strand 12	B	376	382	anti-parallel
Strand 13	B	226	234	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	242	245	first strand
Strand 2	B	262	266	anti-parallel
Strand 3	B	355	358	parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	253	254	first strand
Strand 2	B	248	250	anti-parallel
Strand 3	B	311	314	anti-parallel
Strand 4	B	319	322	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	273	275	first strand
Strand 2	B	343	345	parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	300	301	first strand
Strand 2	B	339	341	anti-parallel
Strand 3	B	328	330	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5NFG

Analysis of interatomic Contacts of Structural Units in PDB entry:
5NFG