Analysis of interatomic Contacts of Structural Units in PDB entry:
5NFJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5NFJ entry

There are 3 chains in PDB entry 5NFJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 202ARG 379
B
 MET 202LYS 378
C
 MET 202ARG 379
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 33 helices in PDB entry 5NFJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
211 215Right-handed 310
Helix 2
AA2
A
216 237Right-handed alpha
Helix 3
AA3
A
252 262Right-handed alpha
Helix 4
AA4
A
262 269Right-handed alpha
Helix 5
AA5
A
277 282Right-handed alpha
Helix 6
AA6
A
283 285Right-handed 310
Helix 7
AA7
A
320 328Right-handed alpha
Helix 8
AA8
A
337 342Right-handed alpha
Helix 9
AA9
A
352 365Right-handed alpha
Helix 10
AB1
A
368 373Right-handed alpha
Helix 11
AB2
A
374 376Right-handed 310
Helix 12
AB3
B
211 215Right-handed 310
Helix 13
AB4
B
216 236Right-handed alpha
Helix 14
AB5
B
252 263Right-handed alpha
Helix 15
AB6
B
264 269Right-handed 310
Helix 16
AB7
B
277 282Right-handed alpha
Helix 17
AB8
B
283 285Right-handed 310
Helix 18
AB9
B
320 329Right-handed alpha
Helix 19
AC1
B
337 342Right-handed alpha
Helix 20
AC2
B
352 367Right-handed alpha
Helix 21
AC3
B
368 373Right-handed alpha
Helix 22
AC4
B
374 376Right-handed 310
Helix 23
AC5
C
211 215Right-handed 310
Helix 24
AC6
C
216 236Right-handed alpha
Helix 25
AC7
C
252 263Right-handed alpha
Helix 26
AC8
C
264 269Right-handed 310
Helix 27
AC9
C
277 282Right-handed alpha
Helix 28
AD1
C
283 285Right-handed 310
Helix 29
AD2
C
320 329Right-handed alpha
Helix 30
AD3
C
337 342Right-handed alpha
Helix 31
AD4
C
352 365Right-handed alpha
Helix 32
AD5
C
368 373Right-handed alpha
Helix 33
AD6
C
374 376Right-handed 310
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There are 3 sheets in PDB entry 5NFJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
272 273first strand
Strand 2
A
242 246parallel
Strand 3
A
204 208parallel
Strand 4
A
306 310parallel
Strand 5
A
287 290parallel
Strand 6
A
333 334parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
272 273first strand
Strand 2
B
242 246parallel
Strand 3
B
204 208parallel
Strand 4
B
306 310parallel
Strand 5
B
287 290parallel
Strand 6
B
332 334parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
272 273first strand
Strand 2
C
242 246parallel
Strand 3
C
204 208parallel
Strand 4
C
306 310parallel
Strand 5
C
287 290parallel
Strand 6
C
332 334parallel
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