Analysis of interatomic Contacts of Structural Units in PDB entry:
5NFN

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5NFN entry

There are 4 chains in PDB entry 5NFN (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	HIS 0	ASP 316
B	SER -1	ASP 316
C	HIS 0	ASP 316
D	SER -1	ASP 316

There are 44 helices in PDB entry 5NFN. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	0	25	Right-handed alpha
Helix 2	AA2	A	37	45	Right-handed alpha
Helix 3	AA3	A	62	67	Right-handed alpha
Helix 4	AA4	A	68	77	Right-handed alpha
Helix 5	AA5	A	109	117	Right-handed alpha
Helix 6	AA6	A	133	139	Right-handed alpha
Helix 7	AA7	A	140	146	Right-handed 310
Helix 8	AA8	A	150	158	Right-handed alpha
Helix 9	AA9	A	199	206	Right-handed 310
Helix 10	AB1	A	250	256	Right-handed 310
Helix 11	AB2	A	297	313	Right-handed alpha
Helix 12	AB3	B	0	25	Right-handed alpha
Helix 13	AB4	B	37	45	Right-handed alpha
Helix 14	AB5	B	62	67	Right-handed alpha
Helix 15	AB6	B	68	77	Right-handed alpha
Helix 16	AB7	B	109	117	Right-handed alpha
Helix 17	AB8	B	133	139	Right-handed alpha
Helix 18	AB9	B	140	146	Right-handed 310
Helix 19	AC1	B	150	158	Right-handed alpha
Helix 20	AC2	B	199	206	Right-handed 310
Helix 21	AC3	B	250	256	Right-handed 310
Helix 22	AC4	B	297	313	Right-handed alpha
Helix 23	AC5	C	1	25	Right-handed alpha
Helix 24	AC6	C	37	45	Right-handed alpha
Helix 25	AC7	C	61	67	Right-handed alpha
Helix 26	AC8	C	68	77	Right-handed alpha
Helix 27	AC9	C	109	117	Right-handed alpha
Helix 28	AD1	C	133	139	Right-handed alpha
Helix 29	AD2	C	140	146	Right-handed 310
Helix 30	AD3	C	150	158	Right-handed alpha
Helix 31	AD4	C	199	206	Right-handed 310
Helix 32	AD5	C	250	256	Right-handed 310
Helix 33	AD6	C	297	313	Right-handed alpha
Helix 34	AD7	D	0	25	Right-handed alpha
Helix 35	AD8	D	37	45	Right-handed alpha
Helix 36	AD9	D	62	67	Right-handed alpha
Helix 37	AE1	D	68	77	Right-handed alpha
Helix 38	AE2	D	109	117	Right-handed alpha
Helix 39	AE3	D	133	139	Right-handed alpha
Helix 40	AE4	D	140	146	Right-handed 310
Helix 41	AE5	D	150	158	Right-handed alpha
Helix 42	AE6	D	199	206	Right-handed 310
Helix 43	AE7	D	250	256	Right-handed 310
Helix 44	AE8	D	297	313	Right-handed alpha

There are 16 sheets in PDB entry 5NFN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	31	32	first strand
Strand 2	A	52	54	parallel
Strand 3	A	268	271	anti-parallel
Strand 4	A	182	190	anti-parallel
Strand 5	A	285	293	anti-parallel
Strand 6	A	163	169	anti-parallel
Strand 7	A	125	128	anti-parallel
Strand 8	A	80	86	anti-parallel
Strand 9	A	103	108	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	90	91	first strand
Strand 2	A	174	178	parallel
Strand 3	A	276	281	anti-parallel
Strand 4	A	192	198	anti-parallel
Strand 5	A	259	264	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	93	95	first strand
Strand 2	A	98	101	anti-parallel
Strand 3	A	209	218	parallel
Strand 4	A	224	228	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	93	95	first strand
Strand 2	A	98	101	anti-parallel
Strand 3	A	209	218	parallel
Strand 4	A	235	237	anti-parallel

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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	31	32	first strand
Strand 2	B	52	54	parallel
Strand 3	B	268	271	anti-parallel
Strand 4	B	182	190	anti-parallel
Strand 5	B	285	293	anti-parallel
Strand 6	B	163	169	anti-parallel
Strand 7	B	125	128	anti-parallel
Strand 8	B	80	86	anti-parallel
Strand 9	B	103	108	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	90	91	first strand
Strand 2	B	174	178	parallel
Strand 3	B	276	281	anti-parallel
Strand 4	B	192	198	anti-parallel
Strand 5	B	259	264	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	93	95	first strand
Strand 2	B	98	101	anti-parallel
Strand 3	B	209	218	parallel
Strand 4	B	224	228	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	93	95	first strand
Strand 2	B	98	101	anti-parallel
Strand 3	B	209	218	parallel
Strand 4	B	235	237	anti-parallel

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There are 9 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	31	32	first strand
Strand 2	C	52	55	parallel
Strand 3	C	267	271	anti-parallel
Strand 4	C	182	190	anti-parallel
Strand 5	C	286	293	anti-parallel
Strand 6	C	163	169	anti-parallel
Strand 7	C	125	128	anti-parallel
Strand 8	C	80	86	anti-parallel
Strand 9	C	103	108	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	93	94	first strand
Strand 2	C	98	101	anti-parallel
Strand 3	C	209	218	parallel
Strand 4	C	224	228	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	93	94	first strand
Strand 2	C	98	101	anti-parallel
Strand 3	C	209	218	parallel
Strand 4	C	235	237	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	175	178	first strand
Strand 2	C	276	281	anti-parallel
Strand 3	C	192	198	anti-parallel
Strand 4	C	259	264	anti-parallel

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There are 9 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	31	32	first strand
Strand 2	D	52	55	parallel
Strand 3	D	267	271	anti-parallel
Strand 4	D	182	190	anti-parallel
Strand 5	D	285	293	anti-parallel
Strand 6	D	163	169	anti-parallel
Strand 7	D	125	128	anti-parallel
Strand 8	D	80	86	anti-parallel
Strand 9	D	103	108	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	90	91	first strand
Strand 2	D	174	178	parallel
Strand 3	D	276	281	anti-parallel
Strand 4	D	192	198	anti-parallel
Strand 5	D	259	264	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	93	95	first strand
Strand 2	D	98	101	anti-parallel
Strand 3	D	209	218	parallel
Strand 4	D	224	228	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	93	95	first strand
Strand 2	D	98	101	anti-parallel
Strand 3	D	209	218	parallel
Strand 4	D	235	237	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5NFN

Analysis of interatomic Contacts of Structural Units in PDB entry:
5NFN