Analysis of interatomic Contacts of Structural Units in PDB entry:
5NFO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5NFO entry

There are 2 chains in PDB entry 5NFO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 0ASP 316
B
 SER -1ASP 316
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 5NFO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
0 25Right-handed alpha
Helix 2
AA2
A
37 45Right-handed alpha
Helix 3
AA3
A
61 67Right-handed alpha
Helix 4
AA4
A
68 77Right-handed alpha
Helix 5
AA5
A
109 117Right-handed alpha
Helix 6
AA6
A
133 139Right-handed alpha
Helix 7
AA7
A
140 146Right-handed 310
Helix 8
AA8
A
150 158Right-handed alpha
Helix 9
AA9
A
199 206Right-handed 310
Helix 10
AB1
A
250 256Right-handed 310
Helix 11
AB2
A
297 313Right-handed alpha
Helix 12
AB3
B
0 25Right-handed alpha
Helix 13
AB4
B
37 45Right-handed alpha
Helix 14
AB5
B
62 67Right-handed alpha
Helix 15
AB6
B
68 77Right-handed alpha
Helix 16
AB7
B
109 117Right-handed alpha
Helix 17
AB8
B
133 139Right-handed alpha
Helix 18
AB9
B
140 146Right-handed 310
Helix 19
AC1
B
150 158Right-handed alpha
Helix 20
AC2
B
199 206Right-handed 310
Helix 21
AC3
B
250 256Right-handed 310
Helix 22
AC4
B
297 313Right-handed alpha
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There are 8 sheets in PDB entry 5NFO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
31 32first strand
Strand 2
A
52 54parallel
Strand 3
A
268 271anti-parallel
Strand 4
A
182 190anti-parallel
Strand 5
A
286 293anti-parallel
Strand 6
A
163 169anti-parallel
Strand 7
A
125 128anti-parallel
Strand 8
A
80 86anti-parallel
Strand 9
A
103 108anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
90 91first strand
Strand 2
A
174 178parallel
Strand 3
A
276 281anti-parallel
Strand 4
A
192 198anti-parallel
Strand 5
A
259 264anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
93 95first strand
Strand 2
A
98 101anti-parallel
Strand 3
A
209 218parallel
Strand 4
A
224 228anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
93 95first strand
Strand 2
A
98 101anti-parallel
Strand 3
A
209 218parallel
Strand 4
A
235 237anti-parallel
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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
31 32first strand
Strand 2
B
52 54parallel
Strand 3
B
268 271anti-parallel
Strand 4
B
182 190anti-parallel
Strand 5
B
285 293anti-parallel
Strand 6
B
163 169anti-parallel
Strand 7
B
125 128anti-parallel
Strand 8
B
80 86anti-parallel
Strand 9
B
103 108anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
90 91first strand
Strand 2
B
174 178parallel
Strand 3
B
276 281anti-parallel
Strand 4
B
192 198anti-parallel
Strand 5
B
259 264anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
93 95first strand
Strand 2
B
98 101anti-parallel
Strand 3
B
209 218parallel
Strand 4
B
224 228anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
93 95first strand
Strand 2
B
98 101anti-parallel
Strand 3
B
209 218parallel
Strand 4
B
235 237anti-parallel
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