Analysis of interatomic Contacts of Structural Units in PDB entry:
5NFQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5NFQ entry

There is 1 chain in PDB entry 5NFQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1HIS 298
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 5NFQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
38 41Right-handed 310
Helix 2
AA2
A
42 50Right-handed alpha
Helix 3
AA3
A
71 75Right-handed 310
Helix 4
AA4
A
76 91Right-handed alpha
Helix 5
AA5
A
102 116Right-handed alpha
Helix 6
AA6
A
133 141Right-handed alpha
Helix 7
AA7
A
141 148Right-handed alpha
Helix 8
AA8
A
148 155Right-handed alpha
Helix 9
AA9
A
156 158Right-handed 310
Helix 10
AB1
A
159 175Right-handed alpha
Helix 11
AB2
A
185 196Right-handed alpha
Helix 12
AB3
A
198 212Right-handed alpha
Helix 13
AB4
A
253 258Right-handed 310
Helix 14
AB5
A
259 264Right-handed alpha
Helix 15
AB6
A
278 283Right-handed alpha
Helix 16
AB7
A
283 296Right-handed alpha
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There is 1 sheet (AA1) in PDB entry 5NFQ.

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
5 9first strand
Strand 2
A
15 21anti-parallel
Strand 3
A
54 59anti-parallel
Strand 4
A
28 32parallel
Strand 5
A
96 101parallel
Strand 6
A
120 126parallel
Strand 7
A
241 246parallel
Strand 8
A
267 272parallel
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