Analysis of interatomic Contacts of Structural Units in PDB entry:
5NFV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5NFV entry

There is 1 chain in PDB entry 5NFV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 0GLN 1252
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 59 helices in PDB entry 5NFV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
26 35Right-handed alpha
Helix 2
AA2
A
35 69Right-handed alpha
Helix 3
AA3
A
72 87Right-handed alpha
Helix 4
AA4
A
91 115Right-handed alpha
Helix 5
AA5
A
116 121Right-handed alpha
Helix 6
AA6
A
124 128Right-handed 310
Helix 7
AA7
A
137 148Right-handed alpha
Helix 8
AA8
A
152 156Right-handed 310
Helix 9
AA9
A
161 172Right-handed alpha
Helix 10
AB1
A
175 178Right-handed 310
Helix 11
AB2
A
179 191Right-handed alpha
Helix 12
AB3
A
198 205Right-handed alpha
Helix 13
AB4
A
206 225Right-handed alpha
Helix 14
AB5
A
226 229Right-handed 310
Helix 15
AB6
A
230 238Right-handed alpha
Helix 16
AB7
A
259 264Right-handed alpha
Helix 17
AB8
A
266 272Right-handed 310
Helix 18
AB9
A
274 287Right-handed alpha
Helix 19
AC1
A
299 312Right-handed alpha
Helix 20
AC2
A
313 320Right-handed 310
Helix 21
AC3
A
344 362Right-handed alpha
Helix 22
AC4
A
369 383Right-handed alpha
Helix 23
AC5
A
396 407Right-handed alpha
Helix 24
AC6
A
411 423Right-handed alpha
Helix 25
AC7
A
453 466Right-handed alpha
Helix 26
AC8
A
474 485Right-handed alpha
Helix 27
AC9
A
486 507Right-handed alpha
Helix 28
AD1
A
512 518Right-handed 310
Helix 29
AD2
A
519 542Right-handed alpha
Helix 30
AD3
A
558 573Right-handed alpha
Helix 31
AD4
A
574 587Right-handed alpha
Helix 32
AD5
A
610 612Right-handed 310
Helix 33
AD6
A
613 618Right-handed alpha
Helix 34
AD7
A
642 649Right-handed alpha
Helix 35
AD8
A
664 674Right-handed alpha
Helix 36
AD9
A
678 683Right-handed alpha
Helix 37
AE1
A
685 695Right-handed alpha
Helix 38
AE2
A
713 731Right-handed alpha
Helix 39
AE3
A
733 738Right-handed 310
Helix 40
AE4
A
743 747Right-handed 310
Helix 41
AE5
A
749 761Right-handed alpha
Helix 42
AE6
A
770 780Right-handed alpha
Helix 43
AE7
A
790 794Right-handed 310
Helix 44
AE8
A
802 813Right-handed alpha
Helix 45
AE9
A
813 819Right-handed alpha
Helix 46
AF1
A
870 875Right-handed 310
Helix 47
AF2
A
895 907Right-handed alpha
Helix 48
AF3
A
908 911Right-handed 310
Helix 49
AF4
A
953 969Right-handed alpha
Helix 50
AF5
A
976 1000Right-handed alpha
Helix 51
AF6
A
1019 1037Right-handed alpha
Helix 52
AF7
A
1064 1068Right-handed 310
Helix 53
AF8
A
1101 1111Right-handed alpha
Helix 54
AF9
A
1131 1133Right-handed 310
Helix 55
AG1
A
1169 1181Right-handed alpha
Helix 56
AG2
A
1191 1198Right-handed alpha
Helix 57
AG3
A
1200 1215Right-handed alpha
Helix 58
AG4
A
1253 1276Right-handed alpha
Helix 59
AG5
A
1287 1298Right-handed alpha
Back to top of page

There are 10 sheets in PDB entry 5NFV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
595 597first strand
Strand 2
A
829 833anti-parallel
Strand 3
A
877 886anti-parallel
Strand 4
A
13 23anti-parallel
Strand 5
A
783 789anti-parallel
Strand 6
A
627 633anti-parallel
Strand 7
A
619 624anti-parallel
Strand 8
A
650 661anti-parallel
Strand 9
A
762 769anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
595 597first strand
Strand 2
A
829 833anti-parallel
Strand 3
A
877 886anti-parallel
Strand 4
A
822 824anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
243 244first strand
Strand 2
A
256 257anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
392 394first strand
Strand 2
A
450 452anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
849 850first strand
Strand 2
A
860 861anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
935 940first strand
Strand 2
A
925 929anti-parallel
Strand 3
A
912 917anti-parallel
Strand 4
A
1001 1006parallel
Strand 5
A
1074 1077parallel
Strand 6
A
1070 1071anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
943 944first strand
Strand 2
A
951 952anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1114 1118first strand
Strand 2
A
1123 1129anti-parallel
Strand 3
A
1141 1145anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1150 1153first strand
Strand 2
A
1165 1168anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1218 1219first strand
Strand 2
A
1228 1229anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il