Analysis of interatomic Contacts of Structural Units in PDB entry:
5NFY

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5NFY entry

There are 8 chains in PDB entry 5NFY (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 3	ARG 525
B	ALA 1	ARG 525
C	ALA 1	ARG 525
D	ALA 1	ARG 525
M	HIS 0	ASP 131
N	HIS -1	ASP 131
O	HIS -1	ASP 131
P	HIS -1	ASP 131

There are 80 helices in PDB entry 5NFY. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	25	29	Right-handed 310
Helix 2	AA2	A	30	32	Right-handed 310
Helix 3	AA3	A	75	82	Right-handed alpha
Helix 4	AA4	A	146	154	Right-handed 310
Helix 5	AA5	A	158	175	Right-handed alpha
Helix 6	AA6	A	187	196	Right-handed alpha
Helix 7	AA7	A	245	248	Right-handed 310
Helix 8	AA8	A	252	259	Right-handed alpha
Helix 9	AA9	A	269	284	Right-handed alpha
Helix 10	AB1	A	302	324	Right-handed alpha
Helix 11	AB2	A	369	374	Right-handed alpha
Helix 12	AB3	A	432	437	Right-handed 310
Helix 13	AB4	A	484	504	Right-handed alpha
Helix 14	AB5	A	516	521	Right-handed alpha
Helix 15	AB6	B	30	32	Right-handed 310
Helix 16	AB7	B	75	82	Right-handed alpha
Helix 17	AB8	B	143	154	Right-handed 310
Helix 18	AB9	B	158	175	Right-handed alpha
Helix 19	AC1	B	187	196	Right-handed alpha
Helix 20	AC2	B	245	248	Right-handed 310
Helix 21	AC3	B	252	259	Right-handed alpha
Helix 22	AC4	B	269	284	Right-handed alpha
Helix 23	AC5	B	302	325	Right-handed alpha
Helix 24	AC6	B	369	374	Right-handed alpha
Helix 25	AC7	B	432	437	Right-handed 310
Helix 26	AC8	B	484	504	Right-handed alpha
Helix 27	AC9	B	516	521	Right-handed alpha
Helix 28	AD1	B	522	524	Right-handed 310
Helix 29	AD2	C	30	32	Right-handed 310
Helix 30	AD3	C	75	82	Right-handed alpha
Helix 31	AD4	C	146	154	Right-handed 310
Helix 32	AD5	C	158	175	Right-handed alpha
Helix 33	AD6	C	187	196	Right-handed alpha
Helix 34	AD7	C	245	248	Right-handed 310
Helix 35	AD8	C	252	259	Right-handed alpha
Helix 36	AD9	C	269	284	Right-handed alpha
Helix 37	AE1	C	301	324	Right-handed alpha
Helix 38	AE2	C	359	361	Right-handed 310
Helix 39	AE3	C	369	374	Right-handed alpha
Helix 40	AE4	C	432	437	Right-handed 310
Helix 41	AE5	C	485	504	Right-handed alpha
Helix 42	AE6	C	516	521	Right-handed alpha
Helix 43	AE7	D	25	29	Right-handed 310
Helix 44	AE8	D	30	32	Right-handed 310
Helix 45	AE9	D	75	82	Right-handed alpha
Helix 46	AF1	D	143	150	Right-handed 310
Helix 47	AF2	D	151	156	Right-handed alpha
Helix 48	AF3	D	158	175	Right-handed alpha
Helix 49	AF4	D	188	196	Right-handed alpha
Helix 50	AF5	D	245	248	Right-handed 310
Helix 51	AF6	D	252	259	Right-handed alpha
Helix 52	AF7	D	269	287	Right-handed alpha
Helix 53	AF8	D	302	325	Right-handed alpha
Helix 54	AF9	D	369	374	Right-handed alpha
Helix 55	AG1	D	432	437	Right-handed 310
Helix 56	AG2	D	484	504	Right-handed alpha
Helix 57	AG3	D	516	521	Right-handed alpha
Helix 58	AG4	M	9	20	Right-handed alpha
Helix 59	AG5	M	22	33	Right-handed alpha
Helix 60	AG6	M	71	73	Right-handed 310
Helix 61	AG7	M	74	80	Right-handed alpha
Helix 62	AG8	M	106	114	Right-handed alpha
Helix 63	AG9	N	7	9	Right-handed 310
Helix 64	AH1	N	10	20	Right-handed alpha
Helix 65	AH2	N	22	33	Right-handed alpha
Helix 66	AH3	N	71	73	Right-handed 310
Helix 67	AH4	N	74	80	Right-handed alpha
Helix 68	AH5	N	106	114	Right-handed alpha
Helix 69	AH6	O	7	9	Right-handed 310
Helix 70	AH7	O	10	20	Right-handed alpha
Helix 71	AH8	O	22	33	Right-handed alpha
Helix 72	AH9	O	71	73	Right-handed 310
Helix 73	AI1	O	74	79	Right-handed alpha
Helix 74	AI2	O	106	114	Right-handed alpha
Helix 75	AI3	P	7	9	Right-handed 310
Helix 76	AI4	P	10	20	Right-handed alpha
Helix 77	AI5	P	22	33	Right-handed alpha
Helix 78	AI6	P	71	73	Right-handed 310
Helix 79	AI7	P	74	80	Right-handed alpha
Helix 80	AI8	P	106	114	Right-handed alpha

There are 37 sheets in PDB entry 5NFY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	34	35	first strand
Strand 2	A	38	39	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	52	55	first strand
Strand 2	A	122	127	anti-parallel
Strand 3	A	131	135	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	116	118	first strand
Strand 2	A	104	111	anti-parallel
Strand 3	A	86	96	anti-parallel
Strand 4	A	138	139	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	116	118	first strand
Strand 2	A	104	111	anti-parallel
Strand 3	A	86	96	anti-parallel
Strand 4	A	182	185	parallel
Strand 5	A	240	243	parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	223	225	first strand
Strand 2	A	216	218	anti-parallel
Strand 3	A	235	236	anti-parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	363	365	first strand
Strand 2	A	347	352	parallel
Strand 3	A	328	332	parallel
Strand 4	A	381	385	parallel
Strand 5	A	396	401	parallel
Strand 6	A	506	510	anti-parallel
Strand 7	A	440	441	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	410	412	first strand
Strand 2	A	418	421	anti-parallel
Strand 3	A	425	428	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	446	448	first strand
Strand 2	A	473	475	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	34	35	first strand
Strand 2	B	38	39	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	52	55	first strand
Strand 2	B	122	127	anti-parallel
Strand 3	B	131	135	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	116	118	first strand
Strand 2	B	104	111	anti-parallel
Strand 3	B	86	96	anti-parallel
Strand 4	B	138	139	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	116	118	first strand
Strand 2	B	104	111	anti-parallel
Strand 3	B	86	96	anti-parallel
Strand 4	B	182	185	parallel
Strand 5	B	240	243	parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	199	200	first strand
Strand 2	B	235	237	parallel
Strand 3	B	216	218	anti-parallel
Strand 4	B	223	225	anti-parallel

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There are 7 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	363	365	first strand
Strand 2	B	347	352	parallel
Strand 3	B	328	332	parallel
Strand 4	B	381	385	parallel
Strand 5	B	396	401	parallel
Strand 6	B	506	511	anti-parallel
Strand 7	B	439	441	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	410	412	first strand
Strand 2	B	418	420	anti-parallel
Strand 3	B	426	428	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	446	448	first strand
Strand 2	B	473	475	parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	34	35	first strand
Strand 2	C	38	39	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	52	55	first strand
Strand 2	C	122	127	anti-parallel
Strand 3	C	131	135	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	116	118	first strand
Strand 2	C	104	111	anti-parallel
Strand 3	C	86	96	anti-parallel
Strand 4	C	138	139	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	116	118	first strand
Strand 2	C	104	111	anti-parallel
Strand 3	C	86	96	anti-parallel
Strand 4	C	182	185	parallel
Strand 5	C	240	243	parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	223	225	first strand
Strand 2	C	216	218	anti-parallel
Strand 3	C	235	236	anti-parallel

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There are 7 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	363	365	first strand
Strand 2	C	347	352	parallel
Strand 3	C	328	332	parallel
Strand 4	C	381	385	parallel
Strand 5	C	396	401	parallel
Strand 6	C	506	511	anti-parallel
Strand 7	C	439	441	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	410	412	first strand
Strand 2	C	418	421	anti-parallel
Strand 3	C	425	428	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	446	448	first strand
Strand 2	C	473	475	parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	34	35	first strand
Strand 2	D	38	39	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	53	55	first strand
Strand 2	D	122	126	anti-parallel
Strand 3	D	131	135	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	116	118	first strand
Strand 2	D	104	111	anti-parallel
Strand 3	D	86	96	anti-parallel
Strand 4	D	138	139	anti-parallel

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There are 5 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	116	118	first strand
Strand 2	D	104	111	anti-parallel
Strand 3	D	86	96	anti-parallel
Strand 4	D	182	185	parallel
Strand 5	D	240	243	parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	223	225	first strand
Strand 2	D	216	218	anti-parallel
Strand 3	D	235	236	anti-parallel

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There are 7 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	363	365	first strand
Strand 2	D	347	352	parallel
Strand 3	D	328	332	parallel
Strand 4	D	381	385	parallel
Strand 5	D	396	401	parallel
Strand 6	D	506	511	anti-parallel
Strand 7	D	439	441	anti-parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	410	412	first strand
Strand 2	D	418	420	anti-parallel
Strand 3	D	426	428	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	446	448	first strand
Strand 2	D	473	475	parallel

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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	55	56	first strand
Strand 2	M	96	100	anti-parallel
Strand 3	M	65	69	anti-parallel

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There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	55	56	first strand
Strand 2	N	96	100	anti-parallel
Strand 3	N	65	69	anti-parallel

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There are 3 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	55	56	first strand
Strand 2	O	96	100	anti-parallel
Strand 3	O	65	69	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	115	116	first strand
Strand 2	O	123	124	anti-parallel

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There are 3 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	55	56	first strand
Strand 2	P	96	100	anti-parallel
Strand 3	P	65	69	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5NFY

Analysis of interatomic Contacts of Structural Units in PDB entry:
5NFY