Analysis of interatomic Contacts of Structural Units in PDB entry:
5NGL

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5NGL entry

There are 3 chains in PDB entry 5NGL (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 37	LYS 494
B	THR 36	SER 495
C	GLY 37	SER 495

There are 52 helices in PDB entry 5NGL. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	89	99	Right-handed alpha
Helix 2	AA2	A	100	113	Right-handed alpha
Helix 3	AA3	A	144	148	Right-handed 310
Helix 4	AA4	A	151	157	Right-handed alpha
Helix 5	AA5	A	157	169	Right-handed alpha
Helix 6	AA6	A	182	184	Right-handed 310
Helix 7	AA7	A	208	226	Right-handed alpha
Helix 8	AA8	A	251	262	Right-handed alpha
Helix 9	AA9	A	262	270	Right-handed alpha
Helix 10	AB1	A	284	292	Right-handed 310
Helix 11	AB2	A	293	300	Right-handed alpha
Helix 12	AB3	A	301	306	Right-handed alpha
Helix 13	AB4	A	320	330	Right-handed alpha
Helix 14	AB5	A	345	347	Right-handed 310
Helix 15	AB6	A	350	362	Right-handed alpha
Helix 16	AB7	A	363	368	Right-handed alpha
Helix 17	AB8	A	413	424	Right-handed alpha
Helix 18	AB9	B	89	98	Right-handed alpha
Helix 19	AC1	B	100	113	Right-handed alpha
Helix 20	AC2	B	144	148	Right-handed 310
Helix 21	AC3	B	151	157	Right-handed alpha
Helix 22	AC4	B	157	169	Right-handed alpha
Helix 23	AC5	B	182	184	Right-handed 310
Helix 24	AC6	B	208	226	Right-handed alpha
Helix 25	AC7	B	251	262	Right-handed alpha
Helix 26	AC8	B	262	270	Right-handed alpha
Helix 27	AC9	B	284	292	Right-handed 310
Helix 28	AD1	B	293	300	Right-handed alpha
Helix 29	AD2	B	301	306	Right-handed alpha
Helix 30	AD3	B	320	330	Right-handed alpha
Helix 31	AD4	B	345	347	Right-handed 310
Helix 32	AD5	B	350	362	Right-handed alpha
Helix 33	AD6	B	363	368	Right-handed alpha
Helix 34	AD7	B	413	424	Right-handed alpha
Helix 35	AD8	C	89	99	Right-handed alpha
Helix 36	AD9	C	100	113	Right-handed alpha
Helix 37	AE1	C	144	148	Right-handed 310
Helix 38	AE2	C	151	157	Right-handed alpha
Helix 39	AE3	C	157	169	Right-handed alpha
Helix 40	AE4	C	182	185	Right-handed 310
Helix 41	AE5	C	205	207	Right-handed 310
Helix 42	AE6	C	208	226	Right-handed alpha
Helix 43	AE7	C	251	262	Right-handed alpha
Helix 44	AE8	C	262	270	Right-handed alpha
Helix 45	AE9	C	284	292	Right-handed 310
Helix 46	AF1	C	293	300	Right-handed alpha
Helix 47	AF2	C	301	306	Right-handed alpha
Helix 48	AF3	C	320	330	Right-handed alpha
Helix 49	AF4	C	345	347	Right-handed 310
Helix 50	AF5	C	350	362	Right-handed alpha
Helix 51	AF6	C	363	368	Right-handed alpha
Helix 52	AF7	C	413	424	Right-handed alpha

There are 16 sheets in PDB entry 5NGL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	53	57	first strand
Strand 2	A	39	45	anti-parallel
Strand 3	A	486	493	anti-parallel
Strand 4	A	454	461	anti-parallel
Strand 5	A	443	449	anti-parallel
Strand 6	A	431	437	anti-parallel
Strand 7	A	70	80	anti-parallel
Strand 8	A	467	472	parallel
Strand 9	A	477	482	anti-parallel

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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	83	87	first strand
Strand 2	A	122	127	parallel
Strand 3	A	173	178	parallel
Strand 4	A	232	233	parallel
Strand 5	A	275	282	parallel
Strand 6	A	310	314	parallel
Strand 7	A	334	339	parallel
Strand 8	A	373	378	parallel
Strand 9	A	83	87	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	186	187	first strand
Strand 2	A	203	204	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	342	343	first strand
Strand 2	A	396	397	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	380	382	first strand
Strand 2	A	400	402	parallel
Strand 3	A	410	412	anti-parallel

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There are 9 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	53	57	first strand
Strand 2	B	39	45	anti-parallel
Strand 3	B	486	493	anti-parallel
Strand 4	B	454	461	anti-parallel
Strand 5	B	443	449	anti-parallel
Strand 6	B	431	437	anti-parallel
Strand 7	B	69	80	anti-parallel
Strand 8	B	467	472	parallel
Strand 9	B	477	482	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	83	87	first strand
Strand 2	B	373	378	parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	122	127	first strand
Strand 2	B	173	178	parallel
Strand 3	B	232	233	parallel
Strand 4	B	275	282	parallel
Strand 5	B	310	314	parallel
Strand 6	B	334	339	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	186	187	first strand
Strand 2	B	203	204	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	342	343	first strand
Strand 2	B	396	397	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	380	382	first strand
Strand 2	B	400	402	parallel
Strand 3	B	410	412	anti-parallel

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There are 9 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	53	57	first strand
Strand 2	C	39	45	anti-parallel
Strand 3	C	486	493	anti-parallel
Strand 4	C	454	461	anti-parallel
Strand 5	C	443	449	anti-parallel
Strand 6	C	431	437	anti-parallel
Strand 7	C	69	80	anti-parallel
Strand 8	C	467	472	parallel
Strand 9	C	477	482	anti-parallel

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There are 9 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	83	87	first strand
Strand 2	C	122	127	parallel
Strand 3	C	173	178	parallel
Strand 4	C	232	233	parallel
Strand 5	C	275	281	parallel
Strand 6	C	310	314	parallel
Strand 7	C	334	339	parallel
Strand 8	C	371	378	parallel
Strand 9	C	83	87	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	186	187	first strand
Strand 2	C	195	196	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	342	343	first strand
Strand 2	C	396	397	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	380	382	first strand
Strand 2	C	400	402	parallel
Strand 3	C	410	412	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5NGL

Analysis of interatomic Contacts of Structural Units in PDB entry:
5NGL