Analysis of interatomic Contacts of Structural Units in PDB entry:
5NGQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5NGQ entry

There are 11 chains in PDB entry 5NGQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 1GLY 114
B
 ALA 1GLY 114
C
 ALA 1GLY 114
D
 ALA 1GLY 114
E
 PRO 203PRO 203
E
 CYS 205CYS 205
E
 ALA 207ALA 207
E
 LYS 209ALA 210
F
 LYS 116LYS 116
G
 LYS 116LYS 116
H
 LYS 116LYS 116
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are no helices in PDB entry 5NGQ

There are 8 sheets in PDB entry 5NGQ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
5 7first strand
Strand 2
A
62 69anti-parallel
Strand 3
A
26 32anti-parallel
Strand 4
A
35 42anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
75 83first strand
Strand 2
A
87 95anti-parallel
Strand 3
A
105 111anti-parallel
Strand 4
A
13 20anti-parallel
Strand 5
A
48 56anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
5 7first strand
Strand 2
B
62 69anti-parallel
Strand 3
B
26 32anti-parallel
Strand 4
B
35 42anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
75 83first strand
Strand 2
B
87 95anti-parallel
Strand 3
B
105 111anti-parallel
Strand 4
B
13 20anti-parallel
Strand 5
B
48 56anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
5 7first strand
Strand 2
C
62 68anti-parallel
Strand 3
C
26 32anti-parallel
Strand 4
C
35 42anti-parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
75 83first strand
Strand 2
C
87 95anti-parallel
Strand 3
C
105 111anti-parallel
Strand 4
C
13 20anti-parallel
Strand 5
C
48 56anti-parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
5 7first strand
Strand 2
D
62 68anti-parallel
Strand 3
D
26 32anti-parallel
Strand 4
D
35 42anti-parallel
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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
75 83first strand
Strand 2
D
87 95anti-parallel
Strand 3
D
105 111anti-parallel
Strand 4
D
13 20anti-parallel
Strand 5
D
48 56anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il