Analysis of interatomic Contacts of Structural Units in PDB entry:
5NGW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5NGW entry

There is 1 chain in PDB entry 5NGW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 11ALA 370
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 5NGW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
12 17Right-handed alpha
Helix 2
AA2
A
61 74Right-handed alpha
Helix 3
AA3
A
87 106Right-handed alpha
Helix 4
AA4
A
107 108Right-handed 310
Helix 5
AA5
A
109 113Right-handed 310
Helix 6
AA6
A
122 126Right-handed 310
Helix 7
AA7
A
138 142Right-handed 310
Helix 8
AA8
A
145 165Right-handed alpha
Helix 9
AA9
A
181 185Right-handed 310
Helix 10
AB1
A
189 205Right-handed alpha
Helix 11
AB2
A
225 230Right-handed alpha
Helix 12
AB3
A
249 255Right-handed alpha
Helix 13
AB4
A
255 272Right-handed alpha
Helix 14
AB5
A
305 318Right-handed alpha
Helix 15
AB6
A
333 337Right-handed 310
Helix 16
AB7
A
357 368Right-handed alpha
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There are 2 sheets in PDB entry 5NGW. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
170 171first strand
Strand 2
A
174 179anti-parallel
Strand 3
A
211 216parallel
Strand 4
A
235 238parallel
Strand 5
A
279 280parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
170 171first strand
Strand 2
A
174 179anti-parallel
Strand 3
A
115 121parallel
Strand 4
A
77 83parallel
Strand 5
A
32 36parallel
Strand 6
A
325 328parallel
Strand 7
A
283 284parallel
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