Analysis of interatomic Contacts of Structural Units in PDB entry:
5NGY

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5NGY entry

There are 2 chains in PDB entry 5NGY (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 171	GLY 1435
B	ASN 290	LYS 312

There are 77 helices in PDB entry 5NGY. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	296	300	Right-handed 310
Helix 2	AA2	A	425	430	Right-handed alpha
Helix 3	AA3	A	435	439	Right-handed 310
Helix 4	AA4	A	460	462	Right-handed 310
Helix 5	AA5	A	476	478	Right-handed 310
Helix 6	AA6	A	482	496	Right-handed alpha
Helix 7	AA7	A	509	532	Right-handed alpha
Helix 8	AA8	A	534	546	Right-handed alpha
Helix 9	AA9	A	560	568	Right-handed 310
Helix 10	AB1	A	588	592	Right-handed 310
Helix 11	AB2	A	638	654	Right-handed alpha
Helix 12	AB3	A	654	660	Right-handed alpha
Helix 13	AB4	A	665	670	Right-handed 310
Helix 14	AB5	A	678	683	Right-handed 310
Helix 15	AB6	A	684	699	Right-handed alpha
Helix 16	AB7	A	703	708	Right-handed alpha
Helix 17	AB8	A	720	728	Right-handed alpha
Helix 18	AB9	A	738	749	Right-handed alpha
Helix 19	AC1	A	757	763	Right-handed 310
Helix 20	AC2	A	793	805	Right-handed alpha
Helix 21	AC3	A	811	817	Right-handed alpha
Helix 22	AC4	A	820	836	Right-handed alpha
Helix 23	AC5	A	838	842	Right-handed 310
Helix 24	AC6	A	848	857	Right-handed alpha
Helix 25	AC7	A	868	872	Right-handed alpha
Helix 26	AC8	A	885	900	Right-handed alpha
Helix 27	AC9	A	961	965	Right-handed 310
Helix 28	AD1	A	985	989	Right-handed 310
Helix 29	AD2	A	1054	1059	Right-handed alpha
Helix 30	AD3	A	1078	1081	Right-handed 310
Helix 31	AD4	A	1082	1090	Right-handed alpha
Helix 32	AD5	A	1090	1097	Right-handed alpha
Helix 33	AD6	A	1116	1120	Right-handed 310
Helix 34	AD7	A	1151	1165	Right-handed alpha
Helix 35	AD8	A	1225	1231	Right-handed alpha
Helix 36	AD9	A	1234	1241	Right-handed alpha
Helix 37	AE1	A	1244	1250	Right-handed alpha
Helix 38	AE2	A	1269	1271	Right-handed 310
Helix 39	AE3	A	1309	1314	Right-handed 310
Helix 40	AE4	B	425	430	Right-handed alpha
Helix 41	AE5	B	435	439	Right-handed 310
Helix 42	AE6	B	460	462	Right-handed 310
Helix 43	AE7	B	476	478	Right-handed 310
Helix 44	AE8	B	482	496	Right-handed alpha
Helix 45	AE9	B	509	532	Right-handed alpha
Helix 46	AF1	B	534	546	Right-handed alpha
Helix 47	AF2	B	560	568	Right-handed 310
Helix 48	AF3	B	588	592	Right-handed 310
Helix 49	AF4	B	638	654	Right-handed alpha
Helix 50	AF5	B	654	660	Right-handed alpha
Helix 51	AF6	B	665	670	Right-handed 310
Helix 52	AF7	B	678	683	Right-handed 310
Helix 53	AF8	B	684	699	Right-handed alpha
Helix 54	AF9	B	703	708	Right-handed alpha
Helix 55	AG1	B	720	728	Right-handed alpha
Helix 56	AG2	B	738	749	Right-handed alpha
Helix 57	AG3	B	757	763	Right-handed 310
Helix 58	AG4	B	793	805	Right-handed alpha
Helix 59	AG5	B	811	817	Right-handed alpha
Helix 60	AG6	B	820	837	Right-handed alpha
Helix 61	AG7	B	838	842	Right-handed 310
Helix 62	AG8	B	848	857	Right-handed alpha
Helix 63	AG9	B	868	872	Right-handed alpha
Helix 64	AH1	B	885	900	Right-handed alpha
Helix 65	AH2	B	961	965	Right-handed 310
Helix 66	AH3	B	985	989	Right-handed 310
Helix 67	AH4	B	1054	1059	Right-handed alpha
Helix 68	AH5	B	1078	1081	Right-handed 310
Helix 69	AH6	B	1082	1090	Right-handed alpha
Helix 70	AH7	B	1090	1097	Right-handed alpha
Helix 71	AH8	B	1116	1120	Right-handed 310
Helix 72	AH9	B	1151	1165	Right-handed alpha
Helix 73	AI1	B	1225	1231	Right-handed alpha
Helix 74	AI2	B	1234	1241	Right-handed alpha
Helix 75	AI3	B	1244	1250	Right-handed alpha
Helix 76	AI4	B	1269	1271	Right-handed 310
Helix 77	AI5	B	1309	1314	Right-handed 310

There are 42 sheets in PDB entry 5NGY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	173	174	first strand
Strand 2	A	201	203	parallel
Strand 3	A	206	208	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	180	183	first strand
Strand 2	A	186	189	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	222	225	first strand
Strand 2	A	228	232	anti-parallel
Strand 3	A	239	240	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	264	266	first strand
Strand 2	A	272	274	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	284	287	first strand
Strand 2	A	292	295	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	306	307	first strand
Strand 2	A	314	316	anti-parallel
Strand 3	A	323	324	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	326	328	first strand
Strand 2	A	335	337	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	348	350	first strand
Strand 2	A	356	358	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	368	371	first strand
Strand 2	A	376	379	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	389	392	first strand
Strand 2	A	397	400	anti-parallel
Strand 3	A	406	408	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	417	420	first strand
Strand 2	A	1318	1323	anti-parallel
Strand 3	A	1328	1331	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	451	452	first strand
Strand 2	A	473	474	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	456	459	first strand
Strand 2	A	463	466	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	548	550	first strand
Strand 2	A	556	558	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1183	1184	first strand
Strand 2	A	632	634	anti-parallel
Strand 3	A	1273	1277	anti-parallel
Strand 4	A	579	583	anti-parallel
Strand 5	A	1189	1198	anti-parallel
Strand 6	A	1211	1220	anti-parallel

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There are 8 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	713	714	first strand
Strand 2	A	673	676	parallel
Strand 3	A	1174	1179	parallel
Strand 4	A	1101	1103	parallel
Strand 5	A	1062	1064	parallel
Strand 6	A	863	867	parallel
Strand 7	A	782	784	parallel
Strand 8	A	735	737	parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	904	905	first strand
Strand 2	A	914	918	anti-parallel
Strand 3	A	940	943	anti-parallel
Strand 4	A	1022	1027	anti-parallel
Strand 5	A	968	975	anti-parallel
Strand 6	A	980	982	anti-parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	904	905	first strand
Strand 2	A	914	918	anti-parallel
Strand 3	A	940	943	anti-parallel
Strand 4	A	1022	1027	anti-parallel
Strand 5	A	968	975	anti-parallel
Strand 6	A	995	996	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	956	959	first strand
Strand 2	A	1002	1005	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1288	1289	first strand
Strand 2	A	1294	1295	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1341	1344	first strand
Strand 2	A	1350	1353	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1369	1371	first strand
Strand 2	A	1378	1380	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1391	1393	first strand
Strand 2	A	1401	1403	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1413	1416	first strand
Strand 2	A	1422	1425	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	315	316	first strand
Strand 2	B	323	324	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	326	328	first strand
Strand 2	B	335	337	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	348	350	first strand
Strand 2	B	356	358	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	368	371	first strand
Strand 2	B	376	379	anti-parallel

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There are 5 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	406	408	first strand
Strand 2	B	397	400	anti-parallel
Strand 3	B	389	392	anti-parallel
Strand 4	B	1391	1393	parallel
Strand 5	B	1401	1403	anti-parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	417	420	first strand
Strand 2	B	1318	1323	anti-parallel
Strand 3	B	1328	1331	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	451	452	first strand
Strand 2	B	473	474	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	456	459	first strand
Strand 2	B	463	466	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	548	549	first strand
Strand 2	B	557	558	anti-parallel

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There are 6 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1183	1184	first strand
Strand 2	B	632	634	anti-parallel
Strand 3	B	1273	1277	anti-parallel
Strand 4	B	579	583	anti-parallel
Strand 5	B	1189	1198	anti-parallel
Strand 6	B	1211	1220	anti-parallel

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There are 8 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	713	714	first strand
Strand 2	B	673	676	parallel
Strand 3	B	1174	1179	parallel
Strand 4	B	1101	1103	parallel
Strand 5	B	1062	1064	parallel
Strand 6	B	863	867	parallel
Strand 7	B	782	784	parallel
Strand 8	B	735	737	parallel

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There are 6 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	904	905	first strand
Strand 2	B	914	918	anti-parallel
Strand 3	B	940	944	anti-parallel
Strand 4	B	1021	1027	anti-parallel
Strand 5	B	968	975	anti-parallel
Strand 6	B	980	982	anti-parallel

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There are 6 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	904	905	first strand
Strand 2	B	914	918	anti-parallel
Strand 3	B	940	944	anti-parallel
Strand 4	B	1021	1027	anti-parallel
Strand 5	B	968	975	anti-parallel
Strand 6	B	995	996	anti-parallel

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There are 2 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	956	959	first strand
Strand 2	B	1002	1005	anti-parallel

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There are 2 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1288	1289	first strand
Strand 2	B	1294	1295	anti-parallel

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There are 3 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1341	1344	first strand
Strand 2	B	1350	1353	anti-parallel
Strand 3	B	1386	1387	anti-parallel

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There are 2 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1369	1371	first strand
Strand 2	B	1378	1380	anti-parallel

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There are 2 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1413	1415	first strand
Strand 2	B	1423	1425	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5NGY

Analysis of interatomic Contacts of Structural Units in PDB entry:
5NGY