Analysis of interatomic Contacts of Structural Units in PDB entry:
5NH2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5NH2 entry

There are 2 chains in PDB entry 5NH2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 14LYS 302
B
 THR 14LEU 69
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 5NH2. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
15 20Right-handed 310
Helix 2
AA2
A
35 55Right-handed alpha
Helix 3
AA3
A
64 77Right-handed alpha
Helix 4
AA4
A
116 133Right-handed alpha
Helix 5
AA5
A
134 137Right-handed 310
Helix 6
AA6
A
140 159Right-handed alpha
Helix 7
AA7
A
164 180Right-handed alpha
Helix 8
AA8
A
185 189Right-handed 310
Helix 9
AA9
A
190 205Right-handed alpha
Helix 10
AB1
A
207 217Right-handed alpha
Helix 11
AB2
A
219 236Right-handed alpha
Helix 12
AB3
A
280 282Right-handed 310
Helix 13
AB4
A
283 288Right-handed alpha
Helix 14
AB5
B
15 34Right-handed alpha
Helix 15
AB6
B
40 52Right-handed alpha
Helix 16
AB7
B
56 67Right-handed alpha
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There are 2 sheets in PDB entry 5NH2. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
91 92first strand
Strand 2
A
98 99anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
245 247first strand
Strand 2
A
273 278parallel
Strand 3
A
265 270anti-parallel
Strand 4
A
253 261anti-parallel
Strand 5
A
295 299anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il