Analysis of interatomic Contacts of Structural Units in PDB entry:
5NHC

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5NHC entry

There are 3 chains in PDB entry 5NHC (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 2	GLN 437
B	LYS 3	GLN 437
C	LYS 3	GLU 377

There are 76 helices in PDB entry 5NHC. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	39	44	Right-handed alpha
Helix 2	AA2	A	49	54	Right-handed alpha
Helix 3	AA3	A	68	72	Right-handed 310
Helix 4	AA4	A	75	95	Right-handed alpha
Helix 5	AA5	A	103	107	Right-handed alpha
Helix 6	AA6	A	112	135	Right-handed alpha
Helix 7	AA7	A	148	152	Right-handed 310
Helix 8	AA8	A	160	182	Right-handed alpha
Helix 9	AA9	A	202	224	Right-handed alpha
Helix 10	AB1	A	247	258	Right-handed alpha
Helix 11	AB2	A	270	276	Right-handed alpha
Helix 12	AB3	A	279	290	Right-handed alpha
Helix 13	AB4	A	315	329	Right-handed alpha
Helix 14	AB5	A	349	378	Right-handed alpha
Helix 15	AB6	A	379	388	Right-handed alpha
Helix 16	AB7	A	389	392	Right-handed 310
Helix 17	AB8	A	393	401	Right-handed alpha
Helix 18	AB9	A	405	417	Right-handed alpha
Helix 19	AC1	A	425	437	Right-handed alpha
Helix 20	AC2	B	39	44	Right-handed alpha
Helix 21	AC3	B	49	54	Right-handed alpha
Helix 22	AC4	B	68	72	Right-handed 310
Helix 23	AC5	B	75	95	Right-handed alpha
Helix 24	AC6	B	103	107	Right-handed alpha
Helix 25	AC7	B	112	135	Right-handed alpha
Helix 26	AC8	B	148	152	Right-handed 310
Helix 27	AC9	B	160	182	Right-handed alpha
Helix 28	AD1	B	202	224	Right-handed alpha
Helix 29	AD2	B	247	258	Right-handed alpha
Helix 30	AD3	B	270	276	Right-handed alpha
Helix 31	AD4	B	279	291	Right-handed alpha
Helix 32	AD5	B	315	329	Right-handed alpha
Helix 33	AD6	B	349	378	Right-handed alpha
Helix 34	AD7	B	379	388	Right-handed alpha
Helix 35	AD8	B	389	392	Right-handed 310
Helix 36	AD9	B	393	401	Right-handed alpha
Helix 37	AE1	B	405	417	Right-handed alpha
Helix 38	AE2	B	425	437	Right-handed alpha
Helix 39	AE3	C	39	44	Right-handed alpha
Helix 40	AE4	C	49	54	Right-handed alpha
Helix 41	AE5	C	68	72	Right-handed 310
Helix 42	AE6	C	75	95	Right-handed alpha
Helix 43	AE7	C	103	107	Right-handed alpha
Helix 44	AE8	C	112	135	Right-handed alpha
Helix 45	AE9	C	148	152	Right-handed 310
Helix 46	AF1	C	160	182	Right-handed alpha
Helix 47	AF2	C	202	224	Right-handed alpha
Helix 48	AF3	C	247	258	Right-handed alpha
Helix 49	AF4	C	270	276	Right-handed alpha
Helix 50	AF5	C	279	290	Right-handed alpha
Helix 51	AF6	C	315	329	Right-handed alpha
Helix 52	AF7	C	349	378	Right-handed alpha
Helix 53	AF8	C	379	388	Right-handed alpha
Helix 54	AF9	C	389	392	Right-handed 310
Helix 55	AG1	C	393	401	Right-handed alpha
Helix 56	AG2	C	405	417	Right-handed alpha
Helix 57	AG3	C	425	437	Right-handed alpha
Helix 58	AG4	D	39	44	Right-handed alpha
Helix 59	AG5	D	49	54	Right-handed alpha
Helix 60	AG6	D	68	72	Right-handed 310
Helix 61	AG7	D	75	95	Right-handed alpha
Helix 62	AG8	D	103	107	Right-handed alpha
Helix 63	AG9	D	112	135	Right-handed alpha
Helix 64	AH1	D	148	152	Right-handed 310
Helix 65	AH2	D	160	182	Right-handed alpha
Helix 66	AH3	D	202	224	Right-handed alpha
Helix 67	AH4	D	247	258	Right-handed alpha
Helix 68	AH5	D	270	276	Right-handed alpha
Helix 69	AH6	D	279	290	Right-handed alpha
Helix 70	AH7	D	315	329	Right-handed alpha
Helix 71	AH8	D	349	378	Right-handed alpha
Helix 72	AH9	D	379	388	Right-handed alpha
Helix 73	AI1	D	389	392	Right-handed 310
Helix 74	AI2	D	393	401	Right-handed alpha
Helix 75	AI3	D	405	417	Right-handed alpha
Helix 76	AI4	D	425	437	Right-handed alpha

There are 12 sheets in PDB entry 5NHC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	33	34	first strand
Strand 2	A	37	38	anti-parallel

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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	45	48	first strand
Strand 2	A	98	102	parallel
Strand 3	A	137	142	parallel
Strand 4	A	185	188	parallel
Strand 5	A	229	232	parallel
Strand 6	A	264	269	parallel
Strand 7	A	293	297	parallel
Strand 8	A	337	339	parallel
Strand 9	A	45	48	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	194	195	first strand
Strand 2	A	242	243	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	33	34	first strand
Strand 2	B	37	38	anti-parallel

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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	45	48	first strand
Strand 2	B	98	102	parallel
Strand 3	B	137	142	parallel
Strand 4	B	185	188	parallel
Strand 5	B	229	232	parallel
Strand 6	B	264	269	parallel
Strand 7	B	293	297	parallel
Strand 8	B	337	339	parallel
Strand 9	B	45	48	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	194	195	first strand
Strand 2	B	242	243	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	33	34	first strand
Strand 2	C	37	38	anti-parallel

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There are 9 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	45	48	first strand
Strand 2	C	98	102	parallel
Strand 3	C	137	142	parallel
Strand 4	C	185	188	parallel
Strand 5	C	229	232	parallel
Strand 6	C	264	269	parallel
Strand 7	C	293	297	parallel
Strand 8	C	337	339	parallel
Strand 9	C	45	48	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	194	195	first strand
Strand 2	C	242	243	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	33	34	first strand
Strand 2	D	37	38	anti-parallel

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There are 9 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	45	48	first strand
Strand 2	D	98	102	parallel
Strand 3	D	137	142	parallel
Strand 4	D	185	188	parallel
Strand 5	D	229	232	parallel
Strand 6	D	264	269	parallel
Strand 7	D	293	297	parallel
Strand 8	D	337	339	parallel
Strand 9	D	45	48	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	194	195	first strand
Strand 2	D	242	243	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5NHC

Analysis of interatomic Contacts of Structural Units in PDB entry:
5NHC