Analysis of interatomic Contacts of Structural Units in PDB entry:
5NHS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5NHS entry

There are 4 chains in PDB entry 5NHS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 10SER 196
A
 CYS 198ARG 296
B
 VAL 10SER 196
B
 CYS 198ARG 295
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 5NHS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
17 38Right-handed alpha
Helix 2
AA2
A
53 71Right-handed alpha
Helix 3
AA3
A
84 98Right-handed alpha
Helix 4
AA4
A
116 123Right-handed alpha
Helix 5
AA5
A
124 128Right-handed 310
Helix 6
AA6
A
142 146Right-handed 310
Helix 7
AA7
A
153 161Right-handed alpha
Helix 8
AA8
A
177 191Right-handed alpha
Helix 9
AA9
A
203 213Right-handed alpha
Helix 10
AB1
A
228 232Right-handed 310
Helix 11
AB2
A
256 262Right-handed alpha
Helix 12
AB3
A
275 294Right-handed alpha
Helix 13
AB4
B
17 38Right-handed alpha
Helix 14
AB5
B
53 71Right-handed alpha
Helix 15
AB6
B
84 98Right-handed alpha
Helix 16
AB7
B
116 123Right-handed alpha
Helix 17
AB8
B
124 128Right-handed 310
Helix 18
AB9
B
142 146Right-handed 310
Helix 19
AC1
B
153 161Right-handed alpha
Helix 20
AC2
B
177 191Right-handed alpha
Helix 21
AC3
B
203 213Right-handed alpha
Helix 22
AC4
B
228 232Right-handed 310
Helix 23
AC5
B
256 262Right-handed alpha
Helix 24
AC6
B
275 294Right-handed alpha
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There are 6 sheets in PDB entry 5NHS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
13 14first strand
Strand 2
A
266 267parallel
Strand 3
A
237 240parallel
Strand 4
A
216 220parallel
Strand 5
A
170 175parallel
Strand 6
A
194 199parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
73 79first strand
Strand 2
A
44 50parallel
Strand 3
A
103 106parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
244 245first strand
Strand 2
A
251 252anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
13 14first strand
Strand 2
B
266 267parallel
Strand 3
B
237 240parallel
Strand 4
B
216 220parallel
Strand 5
B
170 175parallel
Strand 6
B
194 199parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
73 79first strand
Strand 2
B
44 50parallel
Strand 3
B
103 106parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
244 245first strand
Strand 2
B
251 252anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il