Analysis of interatomic Contacts of Structural Units in PDB entry:
5NHT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5NHT entry

There are 5 chains in PDB entry 5NHT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
H
 GLY 1GLU 275
L
 MET 0MET 99
P
 GLU 1VAL 10
A
 GLU 3PRO 199
B
 GLY 3GLN 245
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 5NHT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
H
49 53Right-handed 310
Helix 2
AA2
H
56 85Right-handed alpha
Helix 3
AA3
H
137 151Right-handed alpha
Helix 4
AA4
H
151 162Right-handed alpha
Helix 5
AA5
H
162 175Right-handed alpha
Helix 6
AA6
H
175 180Right-handed alpha
Helix 7
AA7
A
80 84Right-handed 310
Helix 8
AA8
A
184 188Right-handed 310
Helix 9
AA9
B
131 138Right-handed alpha
Helix 10
AB1
B
198 202Right-handed alpha
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There are 19 sheets in PDB entry 5NHT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
46 47first strand
Strand 2
H
31 37anti-parallel
Strand 3
H
21 28anti-parallel
Strand 4
H
3 12anti-parallel
Strand 5
H
94 103anti-parallel
Strand 6
H
109 118anti-parallel
Strand 7
H
121 126anti-parallel
Strand 8
H
133 135anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
189 193first strand
Strand 2
H
198 208anti-parallel
Strand 3
H
241 250anti-parallel
Strand 4
H
228 230anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
189 193first strand
Strand 2
H
198 208anti-parallel
Strand 3
H
241 250anti-parallel
Strand 4
H
234 235anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
222 224first strand
Strand 2
H
216 219anti-parallel
Strand 3
H
258 260anti-parallel
Strand 4
H
271 272anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
6 11first strand
Strand 2
L
21 30anti-parallel
Strand 3
L
62 70anti-parallel
Strand 4
L
50 51anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
6 11first strand
Strand 2
L
21 30anti-parallel
Strand 3
L
62 70anti-parallel
Strand 4
L
55 56anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
44 45first strand
Strand 2
L
36 41anti-parallel
Strand 3
L
78 83anti-parallel
Strand 4
L
91 94anti-parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 6first strand
Strand 2
A
19 25anti-parallel
Strand 3
A
71 76anti-parallel
Strand 4
A
61 66anti-parallel
Strand 5
A
54 58anti-parallel
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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
11 14first strand
Strand 2
A
104 109parallel
Strand 3
A
86 92anti-parallel
Strand 4
A
32 38anti-parallel
Strand 5
A
45 50anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
11 14first strand
Strand 2
A
104 109parallel
Strand 3
A
86 92anti-parallel
Strand 4
A
99 100anti-parallel
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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
118 121first strand
Strand 2
A
133 138anti-parallel
Strand 3
A
170 172anti-parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
152 154first strand
Strand 2
A
174 176anti-parallel
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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
4 6first strand
Strand 2
B
23 25anti-parallel
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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
10 12first strand
Strand 2
B
109 112parallel
Strand 3
B
87 94anti-parallel
Strand 4
B
31 37anti-parallel
Strand 5
B
43 49anti-parallel
Strand 6
B
56 57anti-parallel
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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
10 12first strand
Strand 2
B
109 112parallel
Strand 3
B
87 94anti-parallel
Strand 4
B
104 105anti-parallel
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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
19 21first strand
Strand 2
B
76 78anti-parallel
Strand 3
B
65 66anti-parallel
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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
127 128first strand
Strand 2
B
140 145anti-parallel
Strand 3
B
192 197anti-parallel
Strand 4
B
170 171anti-parallel
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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
148 150first strand
Strand 2
B
188 189anti-parallel
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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
165 166first strand
Strand 2
B
158 160anti-parallel
Strand 3
B
208 212anti-parallel
Strand 4
B
235 239anti-parallel
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