Analysis of interatomic Contacts of Structural Units in PDB entry:
5NIE

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5NIE entry

There are 2 chains in PDB entry 5NIE (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 4	VAL 609
B	ILE 3	CYS 25

There are 91 helices in PDB entry 5NIE. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	79	83	Right-handed 310
Helix 2	AA2	A	119	123	Right-handed 310
Helix 3	AA3	A	138	143	Right-handed 310
Helix 4	AA4	A	200	202	Right-handed 310
Helix 5	AA5	A	226	234	Right-handed alpha
Helix 6	AA6	A	236	249	Right-handed alpha
Helix 7	AA7	A	279	283	Right-handed 310
Helix 8	AA8	A	289	292	Right-handed 310
Helix 9	AA9	A	293	302	Right-handed alpha
Helix 10	AB1	A	310	313	Right-handed 310
Helix 11	AB2	A	314	334	Right-handed alpha
Helix 12	AB3	A	334	357	Right-handed alpha
Helix 13	AB4	A	360	364	Right-handed 310
Helix 14	AB5	A	380	397	Right-handed alpha
Helix 15	AB6	A	399	415	Right-handed alpha
Helix 16	AB7	A	420	432	Right-handed alpha
Helix 17	AB8	A	435	440	Right-handed alpha
Helix 18	AB9	A	443	450	Right-handed alpha
Helix 19	AC1	A	462	477	Right-handed alpha
Helix 20	AC2	A	487	492	Right-handed 310
Helix 21	AC3	A	495	509	Right-handed alpha
Helix 22	AC4	A	513	525	Right-handed alpha
Helix 23	AC5	A	526	529	Right-handed 310
Helix 24	AC6	A	531	545	Right-handed alpha
Helix 25	AC7	A	549	561	Right-handed alpha
Helix 26	AC8	A	563	577	Right-handed alpha
Helix 27	AC9	A	580	592	Right-handed alpha
Helix 28	AD1	A	593	595	Right-handed 310
Helix 29	AD2	A	596	607	Right-handed alpha
Helix 30	AD3	B	79	83	Right-handed 310
Helix 31	AD4	B	119	123	Right-handed 310
Helix 32	AD5	B	139	143	Right-handed 310
Helix 33	AD6	B	198	202	Right-handed 310
Helix 34	AD7	B	226	234	Right-handed alpha
Helix 35	AD8	B	236	249	Right-handed alpha
Helix 36	AD9	B	279	283	Right-handed 310
Helix 37	AE1	B	289	292	Right-handed 310
Helix 38	AE2	B	293	300	Right-handed alpha
Helix 39	AE3	B	310	313	Right-handed 310
Helix 40	AE4	B	314	334	Right-handed alpha
Helix 41	AE5	B	334	357	Right-handed alpha
Helix 42	AE6	B	360	364	Right-handed 310
Helix 43	AE7	B	380	397	Right-handed alpha
Helix 44	AE8	B	399	415	Right-handed alpha
Helix 45	AE9	B	420	432	Right-handed alpha
Helix 46	AF1	B	435	440	Right-handed alpha
Helix 47	AF2	B	443	450	Right-handed alpha
Helix 48	AF3	B	462	477	Right-handed alpha
Helix 49	AF4	B	479	486	Right-handed 310
Helix 50	AF5	B	487	492	Right-handed 310
Helix 51	AF6	B	495	509	Right-handed alpha
Helix 52	AF7	B	513	525	Right-handed alpha
Helix 53	AF8	B	531	545	Right-handed alpha
Helix 54	AF9	B	547	549	Right-handed 310
Helix 55	AG1	B	550	561	Right-handed alpha
Helix 56	AG2	B	563	577	Right-handed alpha
Helix 57	AG3	B	580	592	Right-handed alpha
Helix 58	AG4	B	593	595	Right-handed 310
Helix 59	AG5	B	596	607	Right-handed alpha
Helix 60	AG6	C	79	83	Right-handed 310
Helix 61	AG7	C	119	123	Right-handed 310
Helix 62	AG8	C	138	143	Right-handed 310
Helix 63	AG9	C	200	202	Right-handed 310
Helix 64	AH1	C	226	234	Right-handed alpha
Helix 65	AH2	C	236	249	Right-handed alpha
Helix 66	AH3	C	279	283	Right-handed 310
Helix 67	AH4	C	289	292	Right-handed 310
Helix 68	AH5	C	293	300	Right-handed alpha
Helix 69	AH6	C	310	313	Right-handed 310
Helix 70	AH7	C	314	334	Right-handed alpha
Helix 71	AH8	C	334	357	Right-handed alpha
Helix 72	AH9	C	360	364	Right-handed 310
Helix 73	AI1	C	373	378	Right-handed alpha
Helix 74	AI2	C	380	398	Right-handed alpha
Helix 75	AI3	C	399	415	Right-handed alpha
Helix 76	AI4	C	420	432	Right-handed alpha
Helix 77	AI5	C	435	440	Right-handed alpha
Helix 78	AI6	C	443	450	Right-handed alpha
Helix 79	AI7	C	462	477	Right-handed alpha
Helix 80	AI8	C	481	486	Right-handed 310
Helix 81	AI9	C	487	492	Right-handed 310
Helix 82	AJ1	C	495	509	Right-handed alpha
Helix 83	AJ2	C	513	525	Right-handed alpha
Helix 84	AJ3	C	526	529	Right-handed 310
Helix 85	AJ4	C	531	545	Right-handed alpha
Helix 86	AJ5	C	547	549	Right-handed 310
Helix 87	AJ6	C	550	561	Right-handed alpha
Helix 88	AJ7	C	563	577	Right-handed alpha
Helix 89	AJ8	C	580	592	Right-handed alpha
Helix 90	AJ9	C	593	595	Right-handed 310
Helix 91	AK1	C	596	608	Right-handed alpha

There are 16 sheets in PDB entry 5NIE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	69	70	first strand
Strand 2	A	60	66	anti-parallel
Strand 3	A	99	107	anti-parallel
Strand 4	A	33	44	anti-parallel
Strand 5	A	16	28	anti-parallel
Strand 6	A	153	156	parallel
Strand 7	A	186	198	anti-parallel
Strand 8	A	173	179	anti-parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	69	70	first strand
Strand 2	A	60	66	anti-parallel
Strand 3	A	99	107	anti-parallel
Strand 4	A	33	44	anti-parallel
Strand 5	A	16	28	anti-parallel
Strand 6	A	159	163	parallel
Strand 7	A	186	198	anti-parallel
Strand 8	A	173	179	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	49	56	first strand
Strand 2	A	84	94	anti-parallel
Strand 3	A	73	75	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	115	118	first strand
Strand 2	A	130	133	anti-parallel
Strand 3	A	204	207	anti-parallel
Strand 4	A	167	170	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	210	213	first strand
Strand 2	A	219	222	anti-parallel
Strand 3	A	257	260	parallel
Strand 4	A	275	278	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	306	308	first strand
Strand 2	A	417	419	parallel

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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	69	70	first strand
Strand 2	B	60	66	anti-parallel
Strand 3	B	99	107	anti-parallel
Strand 4	B	33	44	anti-parallel
Strand 5	B	16	28	anti-parallel
Strand 6	B	154	163	parallel
Strand 7	B	186	197	anti-parallel
Strand 8	B	173	179	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	49	56	first strand
Strand 2	B	84	94	anti-parallel
Strand 3	B	73	75	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	115	118	first strand
Strand 2	B	130	133	anti-parallel
Strand 3	B	204	207	anti-parallel
Strand 4	B	167	170	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	210	213	first strand
Strand 2	B	219	222	anti-parallel
Strand 3	B	257	260	parallel
Strand 4	B	275	278	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	306	308	first strand
Strand 2	B	417	419	parallel

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There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	60	65	first strand
Strand 2	C	99	107	anti-parallel
Strand 3	C	33	44	anti-parallel
Strand 4	C	16	28	anti-parallel
Strand 5	C	153	163	parallel
Strand 6	C	186	198	anti-parallel
Strand 7	C	173	179	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	49	56	first strand
Strand 2	C	84	94	anti-parallel
Strand 3	C	73	75	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	115	118	first strand
Strand 2	C	130	133	anti-parallel
Strand 3	C	204	207	anti-parallel
Strand 4	C	167	170	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	210	213	first strand
Strand 2	C	219	222	anti-parallel
Strand 3	C	257	260	parallel
Strand 4	C	275	278	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	306	308	first strand
Strand 2	C	417	419	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5NIE

Analysis of interatomic Contacts of Structural Units in PDB entry:
5NIE