Analysis of interatomic Contacts of Structural Units in PDB entry:
5NII


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5NII entry

There are 2 chains in PDB entry 5NII (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 3PHE 298
B
 THR 3THR 300
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 5NII. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
12 25Right-handed alpha
Helix 2
AA2
A
56 70Right-handed alpha
Helix 3
AA3
A
119 124Right-handed 310
Helix 4
AA4
A
131 136Right-handed alpha
Helix 5
AA5
A
137 140Right-handed 310
Helix 6
AA6
A
150 161Right-handed alpha
Helix 7
AA7
A
179 190Right-handed alpha
Helix 8
AA8
A
231 240Right-handed alpha
Helix 9
AA9
A
265 269Right-handed 310
Helix 10
AB1
A
273 296Right-handed alpha
Helix 11
AB2
B
12 25Right-handed alpha
Helix 12
AB3
B
56 70Right-handed alpha
Helix 13
AB4
B
119 124Right-handed 310
Helix 14
AB5
B
131 136Right-handed alpha
Helix 15
AB6
B
137 140Right-handed 310
Helix 16
AB7
B
150 160Right-handed alpha
Helix 17
AB8
B
161 163Right-handed 310
Helix 18
AB9
B
179 189Right-handed alpha
Helix 19
AC1
B
231 240Right-handed alpha
Helix 20
AC2
B
265 269Right-handed 310
Helix 21
AC3
B
273 296Right-handed alpha
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There are 12 sheets in PDB entry 5NII. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
73 75first strand
Strand 2
A
30 32parallel
Strand 3
A
4 9parallel
Strand 4
A
98 106parallel
Strand 5
A
90 94anti-parallel
Strand 6
A
79 84anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
73 75first strand
Strand 2
A
30 32parallel
Strand 3
A
4 9parallel
Strand 4
A
98 106parallel
Strand 5
A
261 263parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
43 44first strand
Strand 2
A
54 55anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
128 129first strand
Strand 2
A
222 225parallel
Strand 3
A
144 147parallel
Strand 4
A
167 170parallel
Strand 5
A
192 194parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
198 202first strand
Strand 2
A
209 212anti-parallel
Strand 3
A
217 219anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
243 244first strand
Strand 2
A
247 248anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
73 74first strand
Strand 2
B
30 32parallel
Strand 3
B
6 9parallel
Strand 4
B
103 106parallel
Strand 5
B
261 263parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
43 44first strand
Strand 2
B
54 55anti-parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
79 83first strand
Strand 2
B
90 94anti-parallel
Strand 3
B
97 101anti-parallel
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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
128 129first strand
Strand 2
B
222 225parallel
Strand 3
B
144 147parallel
Strand 4
B
167 170parallel
Strand 5
B
193 194parallel
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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
198 202first strand
Strand 2
B
209 212anti-parallel
Strand 3
B
217 219anti-parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
243 244first strand
Strand 2
B
247 248anti-parallel
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