Analysis of interatomic Contacts of Structural Units in PDB entry:
5NIJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5NIJ entry

There are 12 chains in PDB entry 5NIJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 56SER 175
A
 HIS 177ALA 218
A
 GLU 220ALA 494
B
 PHE 54SER 175
B
 HIS 177ALA 218
B
 GLU 220ALA 494
C
 SER 56SER 175
C
 HIS 177ALA 218
C
 GLU 220ALA 494
D
 SER 56SER 175
D
 HIS 177ALA 218
D
 GLU 220ALA 494
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 67 helices in PDB entry 5NIJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
69 71Right-handed 310
Helix 2
AA2
A
72 90Right-handed alpha
Helix 3
AA3
A
92 94Right-handed 310
Helix 4
AA5
A
139 149Right-handed alpha
Helix 5
AA6
A
193 206Right-handed alpha
Helix 6
AA7
A
220 225Right-handed 310
Helix 7
AA8
A
270 282Right-handed alpha
Helix 8
AA9
A
288 301Right-handed alpha
Helix 9
AB1
A
317 323Right-handed 310
Helix 10
AB2
A
324 329Right-handed alpha
Helix 11
AB3
A
353 369Right-handed alpha
Helix 12
AF3
A
373 406Right-handed alpha
Helix 13
AB5
A
427 443Right-handed alpha
Helix 14
AB6
A
445 450Right-handed alpha
Helix 15
AB7
A
452 462Right-handed alpha
Helix 16
AB8
A
465 478Right-handed alpha
Helix 17
AB9
B
69 71Right-handed 310
Helix 18
AC1
B
72 88Right-handed alpha
Helix 19
AC2
B
92 94Right-handed 310
Helix 20
AC4
B
139 149Right-handed alpha
Helix 21
AC5
B
193 206Right-handed alpha
Helix 22
AC6
B
220 225Right-handed 310
Helix 23
AC7
B
270 282Right-handed alpha
Helix 24
AC8
B
288 301Right-handed alpha
Helix 25
AC9
B
317 323Right-handed 310
Helix 26
AD1
B
324 329Right-handed alpha
Helix 27
AD2
B
353 369Right-handed alpha
Helix 28
AD3
B
373 406Right-handed alpha
Helix 29
AD4
B
408 415Right-handed alpha
Helix 30
AD5
B
427 443Right-handed alpha
Helix 31
AD6
B
445 450Right-handed alpha
Helix 32
AD7
B
452 462Right-handed alpha
Helix 33
AD8
B
465 477Right-handed alpha
Helix 34
AD9
C
69 71Right-handed 310
Helix 35
AE1
C
72 88Right-handed alpha
Helix 36
AE2
C
92 94Right-handed 310
Helix 37
AE4
C
139 149Right-handed alpha
Helix 38
AE5
C
193 207Right-handed alpha
Helix 39
AE6
C
220 225Right-handed 310
Helix 40
AE7
C
270 282Right-handed alpha
Helix 41
AE8
C
288 301Right-handed alpha
Helix 42
AE9
C
317 323Right-handed 310
Helix 43
AF1
C
324 329Right-handed alpha
Helix 44
AF2
C
354 369Right-handed alpha
Helix 45
AF3
C
373 406Right-handed alpha
Helix 46
AF4
C
408 415Right-handed alpha
Helix 47
AF5
C
427 443Right-handed alpha
Helix 48
AF6
C
445 450Right-handed alpha
Helix 49
AF7
C
452 462Right-handed alpha
Helix 50
AF8
C
465 477Right-handed alpha
Helix 51
AF9
D
69 71Right-handed 310
Helix 52
AG1
D
72 88Right-handed alpha
Helix 53
AG2
D
92 94Right-handed 310
Helix 54
AG4
D
139 149Right-handed alpha
Helix 55
AG5
D
193 207Right-handed alpha
Helix 56
AG6
D
220 225Right-handed 310
Helix 57
AG7
D
270 282Right-handed alpha
Helix 58
AG8
D
288 301Right-handed alpha
Helix 59
AG9
D
317 323Right-handed 310
Helix 60
AH1
D
324 329Right-handed alpha
Helix 61
AH2
D
353 369Right-handed alpha
Helix 62
AF3
D
373 406Right-handed alpha
Helix 63
AF4
D
408 415Right-handed alpha
Helix 64
AH4
D
427 443Right-handed alpha
Helix 65
AH5
D
445 450Right-handed alpha
Helix 66
AH6
D
452 462Right-handed alpha
Helix 67
AH7
D
465 477Right-handed alpha
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There are 4 sheets in PDB entry 5NIJ. Click on sheet of interest to get list of strands forming it: AA1, AA4, AA7, AB1,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
96 99first strand
Strand 2
A
59 65parallel
Strand 3
A
169 175parallel
Strand 4
A
211 217parallel
Strand 5
A
235 239parallel
Strand 6
A
312 315anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
96 99first strand
Strand 2
B
59 65parallel
Strand 3
B
169 175parallel
Strand 4
B
211 217parallel
Strand 5
B
235 239parallel
Strand 6
B
312 315anti-parallel
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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
96 99first strand
Strand 2
C
59 65parallel
Strand 3
C
169 175parallel
Strand 4
C
211 217parallel
Strand 5
C
235 239parallel
Strand 6
C
312 315anti-parallel
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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
96 99first strand
Strand 2
D
59 65parallel
Strand 3
D
169 175parallel
Strand 4
D
211 217parallel
Strand 5
D
235 239parallel
Strand 6
D
312 315anti-parallel
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