Analysis of interatomic Contacts of Structural Units in PDB entry:
5NIW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5NIW entry

There is 1 chain in PDB entry 5NIW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 3SER 581
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 5NIW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
3 8Right-handed alpha
Helix 2
AA2
A
11 15Right-handed 310
Helix 3
AA3
A
28 39Right-handed alpha
Helix 4
AA4
A
59 64Right-handed alpha
Helix 5
AA5
A
65 68Right-handed 310
Helix 6
AA6
A
101 106Right-handed 310
Helix 7
AA7
A
115 125Right-handed alpha
Helix 8
AA8
A
132 143Right-handed alpha
Helix 9
AA9
A
150 157Right-handed alpha
Helix 10
AB1
A
161 165Right-handed 310
Helix 11
AB2
A
184 195Right-handed alpha
Helix 12
AB3
A
227 233Right-handed alpha
Helix 13
AB4
A
293 301Right-handed alpha
Helix 14
AB5
A
305 310Right-handed alpha
Helix 15
AB6
A
311 313Right-handed 310
Helix 16
AB7
A
340 343Right-handed 310
Helix 17
AB8
A
354 359Right-handed alpha
Helix 18
AB9
A
361 372Right-handed alpha
Helix 19
AC1
A
376 383Right-handed alpha
Helix 20
AC2
A
388 407Right-handed alpha
Helix 21
AC3
A
442 446Right-handed 310
Helix 22
AC4
A
457 476Right-handed alpha
Helix 23
AC5
A
477 482Right-handed 310
Helix 24
AC6
A
490 494Right-handed 310
Helix 25
AC7
A
499 507Right-handed alpha
Helix 26
AC8
A
508 510Right-handed 310
Helix 27
AC9
A
525 529Right-handed 310
Helix 28
AD1
A
560 581Right-handed alpha
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There are 8 sheets in PDB entry 5NIW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
242 245first strand
Strand 2
A
46 49parallel
Strand 3
A
19 25parallel
Strand 4
A
276 287parallel
Strand 5
A
261 270anti-parallel
Strand 6
A
249 258anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
242 245first strand
Strand 2
A
46 49parallel
Strand 3
A
19 25parallel
Strand 4
A
276 287parallel
Strand 5
A
544 546parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
80 81first strand
Strand 2
A
93 94anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
144 146first strand
Strand 2
A
171 173parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
211 213first strand
Strand 2
A
347 353anti-parallel
Strand 3
A
409 416anti-parallel
Strand 4
A
420 427anti-parallel
Strand 5
A
330 338anti-parallel
Strand 6
A
484 489anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
211 213first strand
Strand 2
A
347 353anti-parallel
Strand 3
A
409 416anti-parallel
Strand 4
A
420 427anti-parallel
Strand 5
A
330 338anti-parallel
Strand 6
A
512 513anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
303 304first strand
Strand 2
A
318 319parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
324 326first strand
Strand 2
A
434 438anti-parallel
Strand 3
A
448 451anti-parallel
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