Analysis of interatomic Contacts of Structural Units in PDB entry:
5NIY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5NIY entry

There is 1 chain in PDB entry 5NIY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 197GLU 496
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 5NIY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
197 203Right-handed alpha
Helix 2
AA2
A
205 209Right-handed 310
Helix 3
AA3
A
210 212Right-handed 310
Helix 4
AA4
A
213 219Right-handed alpha
Helix 5
AA5
A
224 238Right-handed alpha
Helix 6
AA6
A
241 259Right-handed alpha
Helix 7
AA7
A
263 265Right-handed 310
Helix 8
AA8
A
266 281Right-handed alpha
Helix 9
AA9
A
305 320Right-handed alpha
Helix 10
AB1
A
333 347Right-handed alpha
Helix 11
AB2
A
359 374Right-handed alpha
Helix 12
AB3
A
389 405Right-handed alpha
Helix 13
AB4
A
424 438Right-handed alpha
Helix 14
AB5
A
455 465Right-handed alpha
Helix 15
AB6
A
476 478Right-handed 310
Helix 16
AB7
A
484 494Right-handed alpha
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There is 1 sheet (AA1) in PDB entry 5NIY.

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
351 352first strand
Strand 2
A
324 327parallel
Strand 3
A
378 381parallel
Strand 4
A
294 299parallel
Strand 5
A
414 420parallel
Strand 6
A
442 446parallel
Strand 7
A
468 472parallel
Strand 8
A
480 482anti-parallel
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