Analysis of interatomic Contacts of Structural Units in PDB entry:
5NJ3

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5NJ3 entry

There are 6 chains in PDB entry 5NJ3 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 33	SER 655
B	GLU 33	SER 655
C	VAL 2	PRO 218
D	ILE 2	ARG 211
E	VAL 2	PRO 218
F	ILE 2	ARG 211

There are 64 helices in PDB entry 5NJ3. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	85	95	Right-handed alpha
Helix 2	AA2	A	116	121	Right-handed alpha
Helix 3	AA3	A	135	148	Right-handed alpha
Helix 4	AA4	A	153	169	Right-handed alpha
Helix 5	AA5	A	187	201	Right-handed alpha
Helix 6	AA6	A	217	234	Right-handed alpha
Helix 7	AA7	A	246	252	Right-handed alpha
Helix 8	AA8	A	269	279	Right-handed alpha
Helix 9	AA9	A	289	299	Right-handed alpha
Helix 10	AB1	A	327	338	Right-handed alpha
Helix 11	AB2	A	341	354	Right-handed alpha
Helix 12	AB3	A	373	391	Right-handed alpha
Helix 13	AB4	A	391	413	Right-handed alpha
Helix 14	AB5	A	419	421	Right-handed 310
Helix 15	AB6	A	422	441	Right-handed alpha
Helix 16	AB7	A	442	450	Right-handed 310
Helix 17	AB8	A	451	461	Right-handed alpha
Helix 18	AB9	A	465	477	Right-handed alpha
Helix 19	AC1	A	477	482	Right-handed alpha
Helix 20	AC2	A	483	494	Right-handed alpha
Helix 21	AC3	A	502	529	Right-handed alpha
Helix 22	AC4	A	533	550	Right-handed alpha
Helix 23	AC5	A	552	557	Right-handed alpha
Helix 24	AC6	A	558	561	Right-handed 310
Helix 25	AC7	A	565	571	Right-handed 310
Helix 26	AC8	A	572	582	Right-handed alpha
Helix 27	AC9	A	582	587	Right-handed alpha
Helix 28	AD1	A	610	618	Right-handed alpha
Helix 29	AD2	A	623	652	Right-handed alpha
Helix 30	AD3	B	85	95	Right-handed alpha
Helix 31	AD4	B	116	121	Right-handed alpha
Helix 32	AD5	B	135	148	Right-handed alpha
Helix 33	AD6	B	153	169	Right-handed alpha
Helix 34	AD7	B	187	201	Right-handed alpha
Helix 35	AD8	B	217	234	Right-handed alpha
Helix 36	AD9	B	246	252	Right-handed alpha
Helix 37	AE1	B	269	279	Right-handed alpha
Helix 38	AE2	B	289	299	Right-handed alpha
Helix 39	AE3	B	327	338	Right-handed alpha
Helix 40	AE4	B	341	354	Right-handed alpha
Helix 41	AE5	B	373	391	Right-handed alpha
Helix 42	AE6	B	391	413	Right-handed alpha
Helix 43	AE7	B	419	421	Right-handed 310
Helix 44	AE8	B	422	441	Right-handed alpha
Helix 45	AE9	B	442	450	Right-handed 310
Helix 46	AF1	B	451	461	Right-handed alpha
Helix 47	AF2	B	465	477	Right-handed alpha
Helix 48	AF3	B	477	482	Right-handed alpha
Helix 49	AF4	B	483	494	Right-handed alpha
Helix 50	AF5	B	502	529	Right-handed alpha
Helix 51	AF6	B	533	550	Right-handed alpha
Helix 52	AF7	B	552	557	Right-handed alpha
Helix 53	AF8	B	558	561	Right-handed 310
Helix 54	AF9	B	565	571	Right-handed 310
Helix 55	AG1	B	572	582	Right-handed alpha
Helix 56	AG2	B	582	587	Right-handed alpha
Helix 57	AG3	B	610	618	Right-handed alpha
Helix 58	AG4	B	623	652	Right-handed alpha
Helix 59	AG5	C	87	91	Right-handed 310
Helix 60	AG6	D	121	128	Right-handed alpha
Helix 61	AG7	D	183	188	Right-handed alpha
Helix 62	AG8	E	87	91	Right-handed 310
Helix 63	AG9	F	121	128	Right-handed alpha
Helix 64	AH1	F	183	188	Right-handed alpha

There are 24 sheets in PDB entry 5NJ3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	67	71	first strand
Strand 2	A	37	42	anti-parallel
Strand 3	A	105	108	anti-parallel
Strand 4	A	111	112	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	122	124	first strand
Strand 2	A	206	210	parallel
Strand 3	A	237	242	parallel
Strand 4	A	75	79	parallel
Strand 5	A	256	260	parallel
Strand 6	A	263	264	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	67	71	first strand
Strand 2	B	37	42	anti-parallel
Strand 3	B	105	108	anti-parallel
Strand 4	B	111	112	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	122	124	first strand
Strand 2	B	206	210	parallel
Strand 3	B	237	242	parallel
Strand 4	B	75	79	parallel
Strand 5	B	256	260	parallel
Strand 6	B	263	264	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	3	7	first strand
Strand 2	C	17	25	anti-parallel
Strand 3	C	78	84	anti-parallel
Strand 4	C	68	73	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	11	12	first strand
Strand 2	C	113	117	parallel
Strand 3	C	92	99	anti-parallel
Strand 4	C	34	40	anti-parallel
Strand 5	C	46	52	anti-parallel
Strand 6	C	58	60	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	11	12	first strand
Strand 2	C	113	117	parallel
Strand 3	C	92	99	anti-parallel
Strand 4	C	106	109	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	127	130	first strand
Strand 2	C	143	151	anti-parallel
Strand 3	C	181	188	anti-parallel
Strand 4	C	170	171	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	127	130	first strand
Strand 2	C	143	151	anti-parallel
Strand 3	C	181	188	anti-parallel
Strand 4	C	175	176	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	157	160	first strand
Strand 2	C	200	204	anti-parallel
Strand 3	C	213	215	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	5	6	first strand
Strand 2	D	19	24	anti-parallel
Strand 3	D	70	75	anti-parallel
Strand 4	D	62	65	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	12	first strand
Strand 2	D	102	105	parallel
Strand 3	D	85	90	anti-parallel
Strand 4	D	33	38	anti-parallel
Strand 5	D	45	48	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	114	118	first strand
Strand 2	D	130	137	anti-parallel
Strand 3	D	174	181	anti-parallel
Strand 4	D	159	163	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	153	154	first strand
Strand 2	D	145	150	anti-parallel
Strand 3	D	192	197	anti-parallel
Strand 4	D	205	209	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	3	7	first strand
Strand 2	E	17	25	anti-parallel
Strand 3	E	78	84	anti-parallel
Strand 4	E	68	73	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	11	12	first strand
Strand 2	E	113	117	parallel
Strand 3	E	92	99	anti-parallel
Strand 4	E	34	40	anti-parallel
Strand 5	E	46	52	anti-parallel
Strand 6	E	58	60	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	11	12	first strand
Strand 2	E	113	117	parallel
Strand 3	E	92	99	anti-parallel
Strand 4	E	106	109	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	127	130	first strand
Strand 2	E	143	151	anti-parallel
Strand 3	E	181	188	anti-parallel
Strand 4	E	170	171	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	127	130	first strand
Strand 2	E	143	151	anti-parallel
Strand 3	E	181	188	anti-parallel
Strand 4	E	175	176	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	157	160	first strand
Strand 2	E	200	204	anti-parallel
Strand 3	E	213	215	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	5	6	first strand
Strand 2	F	19	24	anti-parallel
Strand 3	F	70	75	anti-parallel
Strand 4	F	62	65	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	10	12	first strand
Strand 2	F	102	105	parallel
Strand 3	F	85	90	anti-parallel
Strand 4	F	33	38	anti-parallel
Strand 5	F	45	48	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	114	118	first strand
Strand 2	F	130	137	anti-parallel
Strand 3	F	174	181	anti-parallel
Strand 4	F	159	163	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	153	154	first strand
Strand 2	F	145	150	anti-parallel
Strand 3	F	192	197	anti-parallel
Strand 4	F	205	209	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5NJ3

Analysis of interatomic Contacts of Structural Units in PDB entry:
5NJ3