Analysis of interatomic Contacts of Structural Units in PDB entry:
5NJ5

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5NJ5 entry

There are 3 chains in PDB entry 5NJ5 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 2	ALA 481
B	VAL 7	GLN 450
C	LEU 3	ILE 379

There are 53 helices in PDB entry 5NJ5. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	2	11	Right-handed alpha
Helix 2	AA2	A	12	15	Right-handed 310
Helix 3	AA3	A	17	30	Right-handed alpha
Helix 4	AA4	A	85	97	Right-handed alpha
Helix 5	AA5	A	98	100	Right-handed 310
Helix 6	AA6	A	130	149	Right-handed alpha
Helix 7	AA7	A	209	214	Right-handed 310
Helix 8	AA8	A	222	240	Right-handed alpha
Helix 9	AA9	A	255	257	Right-handed 310
Helix 10	AB1	A	258	265	Right-handed alpha
Helix 11	AB2	A	266	269	Right-handed 310
Helix 12	AB3	A	270	276	Right-handed alpha
Helix 13	AB4	A	335	343	Right-handed alpha
Helix 14	AB5	A	374	381	Right-handed alpha
Helix 15	AB6	A	431	437	Right-handed alpha
Helix 16	AB7	B	8	31	Right-handed alpha
Helix 17	AB8	B	85	101	Right-handed alpha
Helix 18	AB9	B	113	117	Right-handed 310
Helix 19	AC1	B	133	150	Right-handed alpha
Helix 20	AC2	B	212	216	Right-handed 310
Helix 21	AC3	B	218	233	Right-handed alpha
Helix 22	AC4	B	249	265	Right-handed alpha
Helix 23	AC5	B	265	271	Right-handed alpha
Helix 24	AC6	B	330	338	Right-handed alpha
Helix 25	AC7	B	359	368	Right-handed alpha
Helix 26	AC8	B	415	421	Right-handed alpha
Helix 27	AC9	C	4	11	Right-handed alpha
Helix 28	AD1	C	12	15	Right-handed 310
Helix 29	AD2	C	17	30	Right-handed alpha
Helix 30	AD3	C	85	97	Right-handed alpha
Helix 31	AD4	C	98	100	Right-handed 310
Helix 32	AD5	C	124	129	Right-handed alpha
Helix 33	AD6	C	130	149	Right-handed alpha
Helix 34	AD7	C	209	214	Right-handed 310
Helix 35	AD8	C	222	240	Right-handed alpha
Helix 36	AD9	C	255	257	Right-handed 310
Helix 37	AE1	C	258	265	Right-handed alpha
Helix 38	AE2	C	266	269	Right-handed 310
Helix 39	AE3	C	270	276	Right-handed alpha
Helix 40	AE4	C	335	343	Right-handed alpha
Helix 41	AE5	C	374	381	Right-handed alpha
Helix 42	AE6	C	431	437	Right-handed alpha
Helix 43	AE7	D	8	31	Right-handed alpha
Helix 44	AE8	D	85	100	Right-handed alpha
Helix 45	AE9	D	113	117	Right-handed 310
Helix 46	AF1	D	133	150	Right-handed alpha
Helix 47	AF2	D	212	216	Right-handed 310
Helix 48	AF3	D	218	233	Right-handed alpha
Helix 49	AF4	D	249	265	Right-handed alpha
Helix 50	AF5	D	265	271	Right-handed alpha
Helix 51	AF6	D	330	338	Right-handed alpha
Helix 52	AF7	D	359	368	Right-handed alpha
Helix 53	AF8	D	415	421	Right-handed alpha

There are 20 sheets in PDB entry 5NJ5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 11 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	196	206	first strand
Strand 2	A	175	193	anti-parallel
Strand 3	A	152	170	anti-parallel
Strand 4	A	35	51	anti-parallel
Strand 5	A	54	72	anti-parallel
Strand 6	A	75	81	anti-parallel
Strand 7	B	54	72	parallel
Strand 8	B	35	51	anti-parallel
Strand 9	B	155	174	anti-parallel
Strand 10	B	179	197	anti-parallel
Strand 11	B	200	210	anti-parallel

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There are 11 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	196	206	first strand
Strand 2	A	175	193	anti-parallel
Strand 3	A	152	170	anti-parallel
Strand 4	A	35	51	anti-parallel
Strand 5	A	54	72	anti-parallel
Strand 6	B	75	81	parallel
Strand 7	B	54	72	anti-parallel
Strand 8	B	35	51	anti-parallel
Strand 9	B	155	174	anti-parallel
Strand 10	B	179	197	anti-parallel
Strand 11	B	200	210	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	216	217	first strand
Strand 2	A	220	221	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	417	422	first strand
Strand 2	A	402	414	anti-parallel
Strand 3	A	384	397	anti-parallel
Strand 4	A	245	252	parallel
Strand 5	A	470	478	anti-parallel
Strand 6	A	438	441	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	417	422	first strand
Strand 2	A	402	414	anti-parallel
Strand 3	A	426	430	anti-parallel
Strand 4	A	470	478	anti-parallel
Strand 5	A	438	441	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	328	329	first strand
Strand 2	A	320	325	anti-parallel
Strand 3	A	296	299	anti-parallel
Strand 4	A	365	368	anti-parallel
Strand 5	A	459	467	parallel
Strand 6	A	446	447	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	328	329	first strand
Strand 2	A	320	325	anti-parallel
Strand 3	A	296	299	anti-parallel
Strand 4	A	365	368	anti-parallel
Strand 5	A	459	467	parallel
Strand 6	A	452	456	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	350	351	first strand
Strand 2	A	360	361	anti-parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	424	425	first strand
Strand 2	B	440	448	anti-parallel
Strand 3	B	401	414	anti-parallel
Strand 4	B	387	398	anti-parallel
Strand 5	B	370	377	anti-parallel
Strand 6	B	242	248	parallel
Strand 7	B	440	448	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	323	324	first strand
Strand 2	B	316	320	anti-parallel
Strand 3	B	291	293	anti-parallel
Strand 4	B	351	352	anti-parallel
Strand 5	B	435	436	parallel

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There are 11 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	196	206	first strand
Strand 2	C	175	193	anti-parallel
Strand 3	C	152	170	anti-parallel
Strand 4	C	35	51	anti-parallel
Strand 5	C	54	72	anti-parallel
Strand 6	C	75	81	anti-parallel
Strand 7	D	54	72	parallel
Strand 8	D	35	51	anti-parallel
Strand 9	D	155	174	anti-parallel
Strand 10	D	179	197	anti-parallel
Strand 11	D	200	210	anti-parallel

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There are 11 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	196	206	first strand
Strand 2	C	175	193	anti-parallel
Strand 3	C	152	170	anti-parallel
Strand 4	C	35	51	anti-parallel
Strand 5	C	54	72	anti-parallel
Strand 6	D	75	81	parallel
Strand 7	D	54	72	anti-parallel
Strand 8	D	35	51	anti-parallel
Strand 9	D	155	174	anti-parallel
Strand 10	D	179	197	anti-parallel
Strand 11	D	200	210	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	216	217	first strand
Strand 2	C	220	221	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	417	421	first strand
Strand 2	C	402	414	anti-parallel
Strand 3	C	384	397	anti-parallel
Strand 4	C	245	252	parallel
Strand 5	C	470	478	anti-parallel
Strand 6	C	438	441	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	417	421	first strand
Strand 2	C	402	414	anti-parallel
Strand 3	C	426	430	anti-parallel
Strand 4	C	470	478	anti-parallel
Strand 5	C	438	441	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	328	329	first strand
Strand 2	C	320	325	anti-parallel
Strand 3	C	296	299	anti-parallel
Strand 4	C	365	368	anti-parallel
Strand 5	C	459	467	parallel
Strand 6	C	446	447	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	328	329	first strand
Strand 2	C	320	325	anti-parallel
Strand 3	C	296	299	anti-parallel
Strand 4	C	365	368	anti-parallel
Strand 5	C	459	467	parallel
Strand 6	C	452	456	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	350	351	first strand
Strand 2	C	360	361	anti-parallel

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There are 7 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	424	425	first strand
Strand 2	D	440	448	anti-parallel
Strand 3	D	401	414	anti-parallel
Strand 4	D	387	398	anti-parallel
Strand 5	D	370	377	anti-parallel
Strand 6	D	242	248	parallel
Strand 7	D	440	448	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	323	324	first strand
Strand 2	D	316	320	anti-parallel
Strand 3	D	291	293	anti-parallel
Strand 4	D	351	352	anti-parallel
Strand 5	D	435	436	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5NJ5

Analysis of interatomic Contacts of Structural Units in PDB entry:
5NJ5