Analysis of interatomic Contacts of Structural Units in PDB entry:
5NJA

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5NJA entry

There are 3 chains in PDB entry 5NJA (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 2	ALA 481
B	ILE 8	GLN 450
C	SER 2	LYS 336

There are 54 helices in PDB entry 5NJA. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	2	11	Right-handed alpha
Helix 2	AA2	A	12	15	Right-handed 310
Helix 3	AA3	A	17	29	Right-handed alpha
Helix 4	AA4	A	85	97	Right-handed alpha
Helix 5	AA5	A	98	100	Right-handed 310
Helix 6	AA6	A	124	129	Right-handed alpha
Helix 7	AA7	A	130	149	Right-handed alpha
Helix 8	AA8	A	209	214	Right-handed 310
Helix 9	AA9	A	222	240	Right-handed alpha
Helix 10	AB1	A	255	257	Right-handed 310
Helix 11	AB2	A	258	265	Right-handed alpha
Helix 12	AB3	A	266	269	Right-handed 310
Helix 13	AB4	A	270	276	Right-handed alpha
Helix 14	AB5	A	335	343	Right-handed alpha
Helix 15	AB6	A	374	381	Right-handed alpha
Helix 16	AB7	A	431	437	Right-handed alpha
Helix 17	AB8	B	9	31	Right-handed alpha
Helix 18	AB9	B	85	101	Right-handed alpha
Helix 19	AC1	B	113	117	Right-handed 310
Helix 20	AC2	B	133	150	Right-handed alpha
Helix 21	AC3	B	212	216	Right-handed 310
Helix 22	AC4	B	218	233	Right-handed alpha
Helix 23	AC5	B	249	265	Right-handed alpha
Helix 24	AC6	B	265	271	Right-handed alpha
Helix 25	AC7	B	330	337	Right-handed alpha
Helix 26	AC8	B	359	368	Right-handed alpha
Helix 27	AC9	B	415	421	Right-handed alpha
Helix 28	AD1	C	3	11	Right-handed alpha
Helix 29	AD2	C	12	15	Right-handed 310
Helix 30	AD3	C	17	29	Right-handed alpha
Helix 31	AD4	C	85	97	Right-handed alpha
Helix 32	AD5	C	98	100	Right-handed 310
Helix 33	AD6	C	124	129	Right-handed alpha
Helix 34	AD7	C	130	149	Right-handed alpha
Helix 35	AD8	C	209	214	Right-handed 310
Helix 36	AD9	C	222	240	Right-handed alpha
Helix 37	AE1	C	255	257	Right-handed 310
Helix 38	AE2	C	258	265	Right-handed alpha
Helix 39	AE3	C	266	269	Right-handed 310
Helix 40	AE4	C	270	276	Right-handed alpha
Helix 41	AE5	C	335	343	Right-handed alpha
Helix 42	AE6	C	374	381	Right-handed alpha
Helix 43	AE7	C	431	437	Right-handed alpha
Helix 44	AE8	D	8	31	Right-handed alpha
Helix 45	AE9	D	85	100	Right-handed alpha
Helix 46	AF1	D	113	117	Right-handed 310
Helix 47	AF2	D	133	150	Right-handed alpha
Helix 48	AF3	D	212	216	Right-handed 310
Helix 49	AF4	D	218	233	Right-handed alpha
Helix 50	AF5	D	249	265	Right-handed alpha
Helix 51	AF6	D	265	271	Right-handed alpha
Helix 52	AF7	D	330	337	Right-handed alpha
Helix 53	AF8	D	359	368	Right-handed alpha
Helix 54	AF9	D	415	421	Right-handed alpha

There are 20 sheets in PDB entry 5NJA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 11 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	196	206	first strand
Strand 2	A	175	193	anti-parallel
Strand 3	A	152	170	anti-parallel
Strand 4	A	35	51	anti-parallel
Strand 5	A	54	72	anti-parallel
Strand 6	A	75	81	anti-parallel
Strand 7	B	54	72	parallel
Strand 8	B	35	51	anti-parallel
Strand 9	B	155	174	anti-parallel
Strand 10	B	179	197	anti-parallel
Strand 11	B	200	210	anti-parallel

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There are 11 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	196	206	first strand
Strand 2	A	175	193	anti-parallel
Strand 3	A	152	170	anti-parallel
Strand 4	A	35	51	anti-parallel
Strand 5	A	54	72	anti-parallel
Strand 6	B	75	81	parallel
Strand 7	B	54	72	anti-parallel
Strand 8	B	35	51	anti-parallel
Strand 9	B	155	174	anti-parallel
Strand 10	B	179	197	anti-parallel
Strand 11	B	200	210	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	216	217	first strand
Strand 2	A	220	221	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	417	422	first strand
Strand 2	A	402	414	anti-parallel
Strand 3	A	384	397	anti-parallel
Strand 4	A	245	252	parallel
Strand 5	A	470	478	anti-parallel
Strand 6	A	438	441	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	417	422	first strand
Strand 2	A	402	414	anti-parallel
Strand 3	A	426	430	anti-parallel
Strand 4	A	470	478	anti-parallel
Strand 5	A	438	441	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	328	329	first strand
Strand 2	A	320	325	anti-parallel
Strand 3	A	296	299	anti-parallel
Strand 4	A	365	368	anti-parallel
Strand 5	A	459	467	parallel
Strand 6	A	446	447	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	328	329	first strand
Strand 2	A	320	325	anti-parallel
Strand 3	A	296	299	anti-parallel
Strand 4	A	365	368	anti-parallel
Strand 5	A	459	467	parallel
Strand 6	A	452	456	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	350	351	first strand
Strand 2	A	360	361	anti-parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	424	425	first strand
Strand 2	B	440	448	anti-parallel
Strand 3	B	401	414	anti-parallel
Strand 4	B	387	398	anti-parallel
Strand 5	B	370	377	anti-parallel
Strand 6	B	242	248	parallel
Strand 7	B	440	448	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	323	324	first strand
Strand 2	B	316	320	anti-parallel
Strand 3	B	291	293	anti-parallel
Strand 4	B	351	352	anti-parallel
Strand 5	B	435	436	parallel

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There are 11 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	196	206	first strand
Strand 2	C	175	193	anti-parallel
Strand 3	C	152	170	anti-parallel
Strand 4	C	35	51	anti-parallel
Strand 5	C	54	72	anti-parallel
Strand 6	C	75	81	anti-parallel
Strand 7	D	54	72	parallel
Strand 8	D	35	51	anti-parallel
Strand 9	D	155	174	anti-parallel
Strand 10	D	179	197	anti-parallel
Strand 11	D	200	210	anti-parallel

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There are 11 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	196	206	first strand
Strand 2	C	175	193	anti-parallel
Strand 3	C	152	170	anti-parallel
Strand 4	C	35	51	anti-parallel
Strand 5	C	54	72	anti-parallel
Strand 6	D	75	81	parallel
Strand 7	D	54	72	anti-parallel
Strand 8	D	35	51	anti-parallel
Strand 9	D	155	174	anti-parallel
Strand 10	D	179	197	anti-parallel
Strand 11	D	200	210	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	216	217	first strand
Strand 2	C	220	221	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	417	421	first strand
Strand 2	C	402	414	anti-parallel
Strand 3	C	384	397	anti-parallel
Strand 4	C	245	252	parallel
Strand 5	C	470	478	anti-parallel
Strand 6	C	438	441	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	417	421	first strand
Strand 2	C	402	414	anti-parallel
Strand 3	C	426	430	anti-parallel
Strand 4	C	470	478	anti-parallel
Strand 5	C	438	441	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	328	329	first strand
Strand 2	C	320	325	anti-parallel
Strand 3	C	296	299	anti-parallel
Strand 4	C	365	368	anti-parallel
Strand 5	C	459	467	parallel
Strand 6	C	446	447	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	328	329	first strand
Strand 2	C	320	325	anti-parallel
Strand 3	C	296	299	anti-parallel
Strand 4	C	365	368	anti-parallel
Strand 5	C	459	467	parallel
Strand 6	C	452	456	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	350	351	first strand
Strand 2	C	360	361	anti-parallel

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There are 7 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	424	425	first strand
Strand 2	D	440	448	anti-parallel
Strand 3	D	401	414	anti-parallel
Strand 4	D	387	398	anti-parallel
Strand 5	D	370	377	anti-parallel
Strand 6	D	242	248	parallel
Strand 7	D	440	448	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	323	324	first strand
Strand 2	D	316	320	anti-parallel
Strand 3	D	291	293	anti-parallel
Strand 4	D	351	352	anti-parallel
Strand 5	D	435	436	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5NJA

Analysis of interatomic Contacts of Structural Units in PDB entry:
5NJA