Analysis of interatomic Contacts of Structural Units in PDB entry:
5NJC

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5NJC entry

There are 3 chains in PDB entry 5NJC (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 3	ALA 481
B	ILE 8	GLN 450
C	SER 2	ALA 339

There are 56 helices in PDB entry 5NJC. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	3	11	Right-handed alpha
Helix 2	AA2	A	12	15	Right-handed 310
Helix 3	AA3	A	17	30	Right-handed alpha
Helix 4	AA4	A	85	97	Right-handed alpha
Helix 5	AA5	A	98	100	Right-handed 310
Helix 6	AA6	A	124	129	Right-handed alpha
Helix 7	AA7	A	130	149	Right-handed alpha
Helix 8	AA8	A	209	214	Right-handed 310
Helix 9	AA9	A	222	240	Right-handed alpha
Helix 10	AB1	A	255	257	Right-handed 310
Helix 11	AB2	A	258	265	Right-handed alpha
Helix 12	AB3	A	266	269	Right-handed 310
Helix 13	AB4	A	270	276	Right-handed alpha
Helix 14	AB5	A	335	342	Right-handed alpha
Helix 15	AB6	A	374	381	Right-handed alpha
Helix 16	AB7	A	431	437	Right-handed alpha
Helix 17	AB8	B	9	31	Right-handed alpha
Helix 18	AB9	B	85	101	Right-handed alpha
Helix 19	AC1	B	113	117	Right-handed 310
Helix 20	AC2	B	133	150	Right-handed alpha
Helix 21	AC3	B	212	216	Right-handed 310
Helix 22	AC4	B	218	233	Right-handed alpha
Helix 23	AC5	B	249	259	Right-handed alpha
Helix 24	AC6	B	259	264	Right-handed alpha
Helix 25	AC7	B	265	271	Right-handed alpha
Helix 26	AC8	B	330	338	Right-handed alpha
Helix 27	AC9	B	359	368	Right-handed alpha
Helix 28	AD1	B	415	421	Right-handed alpha
Helix 29	AD2	C	3	11	Right-handed alpha
Helix 30	AD3	C	12	15	Right-handed 310
Helix 31	AD4	C	17	30	Right-handed alpha
Helix 32	AD5	C	85	97	Right-handed alpha
Helix 33	AD6	C	98	100	Right-handed 310
Helix 34	AD7	C	124	129	Right-handed alpha
Helix 35	AD8	C	130	149	Right-handed alpha
Helix 36	AD9	C	209	214	Right-handed 310
Helix 37	AE1	C	222	240	Right-handed alpha
Helix 38	AE2	C	255	257	Right-handed 310
Helix 39	AE3	C	258	265	Right-handed alpha
Helix 40	AE4	C	266	269	Right-handed 310
Helix 41	AE5	C	270	276	Right-handed alpha
Helix 42	AE6	C	335	343	Right-handed alpha
Helix 43	AE7	C	374	381	Right-handed alpha
Helix 44	AE8	C	431	437	Right-handed alpha
Helix 45	AE9	D	10	31	Right-handed alpha
Helix 46	AF1	D	85	101	Right-handed alpha
Helix 47	AF2	D	113	117	Right-handed 310
Helix 48	AF3	D	133	150	Right-handed alpha
Helix 49	AF4	D	212	216	Right-handed 310
Helix 50	AF5	D	218	233	Right-handed alpha
Helix 51	AF6	D	249	259	Right-handed alpha
Helix 52	AF7	D	259	264	Right-handed alpha
Helix 53	AF8	D	265	271	Right-handed alpha
Helix 54	AF9	D	330	338	Right-handed alpha
Helix 55	AG1	D	359	368	Right-handed alpha
Helix 56	AG2	D	415	421	Right-handed alpha

There are 22 sheets in PDB entry 5NJC. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	75	81	first strand
Strand 2	A	54	72	anti-parallel
Strand 3	A	35	51	anti-parallel
Strand 4	A	152	170	anti-parallel
Strand 5	A	175	193	anti-parallel
Strand 6	A	196	206	anti-parallel

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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	245	248	first strand
Strand 2	A	475	478	anti-parallel

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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	438	441	first strand
Strand 2	A	470	472	anti-parallel
Strand 3	A	249	252	anti-parallel
Strand 4	A	384	388	parallel
Strand 5	A	411	414	anti-parallel

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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	464	466	first strand
Strand 2	A	365	368	parallel
Strand 3	A	296	299	anti-parallel
Strand 4	A	320	324	anti-parallel

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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	394	397	first strand
Strand 2	A	402	406	anti-parallel
Strand 3	A	426	430	anti-parallel

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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	452	456	first strand
Strand 2	A	459	463	anti-parallel

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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	200	210	first strand
Strand 2	B	179	197	anti-parallel
Strand 3	B	160	174	anti-parallel
Strand 4	B	35	50	anti-parallel
Strand 5	B	58	72	anti-parallel
Strand 6	B	75	81	anti-parallel

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There are 7 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	242	244	first strand
Strand 2	B	445	448	anti-parallel
Strand 3	B	409	414	anti-parallel
Strand 4	B	387	397	anti-parallel
Strand 5	B	370	377	anti-parallel
Strand 6	B	246	248	parallel
Strand 7	B	440	442	anti-parallel

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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	155	158	first strand
Strand 2	B	193	195	anti-parallel

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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	291	293	first strand
Strand 2	B	316	319	anti-parallel

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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	394	398	first strand
Strand 2	B	401	406	anti-parallel

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There are 6 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	75	81	first strand
Strand 2	C	54	72	anti-parallel
Strand 3	C	35	51	anti-parallel
Strand 4	C	152	170	anti-parallel
Strand 5	C	175	193	anti-parallel
Strand 6	C	196	206	anti-parallel

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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	245	248	first strand
Strand 2	C	475	478	anti-parallel

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There are 5 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	438	441	first strand
Strand 2	C	470	472	anti-parallel
Strand 3	C	249	252	anti-parallel
Strand 4	C	384	388	parallel
Strand 5	C	411	414	anti-parallel

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There are 4 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	464	466	first strand
Strand 2	C	365	368	parallel
Strand 3	C	296	299	anti-parallel
Strand 4	C	320	324	anti-parallel

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There are 3 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	394	397	first strand
Strand 2	C	402	406	anti-parallel
Strand 3	C	426	430	anti-parallel

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There are 2 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	452	456	first strand
Strand 2	C	459	463	anti-parallel

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There are 6 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	200	210	first strand
Strand 2	D	179	197	anti-parallel
Strand 3	D	160	174	anti-parallel
Strand 4	D	35	50	anti-parallel
Strand 5	D	58	72	anti-parallel
Strand 6	D	75	81	anti-parallel

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There are 7 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	242	244	first strand
Strand 2	D	445	448	anti-parallel
Strand 3	D	409	414	anti-parallel
Strand 4	D	387	397	anti-parallel
Strand 5	D	370	377	anti-parallel
Strand 6	D	246	248	parallel
Strand 7	D	440	442	anti-parallel

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There are 2 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	155	158	first strand
Strand 2	D	193	195	anti-parallel

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There are 2 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	291	293	first strand
Strand 2	D	316	319	anti-parallel

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There are 2 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	394	398	first strand
Strand 2	D	401	406	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5NJC

Analysis of interatomic Contacts of Structural Units in PDB entry:
5NJC