Analysis of interatomic Contacts of Structural Units in PDB entry:
5NJG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5NJG entry

There are 6 chains in PDB entry 5NJG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 370SER 655
B
 THR 370SER 655
C
 VAL 2SER 119
D
 ILE 2ARG 107
E
 VAL 2SER 119
F
 ILE 2ARG 107
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 38 helices in PDB entry 5NJG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
373 391Right-handed alpha
Helix 2
AA2
A
391 413Right-handed alpha
Helix 3
AA3
A
419 421Right-handed 310
Helix 4
AA4
A
422 441Right-handed alpha
Helix 5
AA5
A
442 450Right-handed 310
Helix 6
AA6
A
451 461Right-handed alpha
Helix 7
AA7
A
465 477Right-handed alpha
Helix 8
AA8
A
477 482Right-handed alpha
Helix 9
AA9
A
483 494Right-handed alpha
Helix 10
AB1
A
502 529Right-handed alpha
Helix 11
AB2
A
533 550Right-handed alpha
Helix 12
AB3
A
552 557Right-handed alpha
Helix 13
AB4
A
558 561Right-handed 310
Helix 14
AB5
A
565 571Right-handed 310
Helix 15
AB6
A
572 582Right-handed alpha
Helix 16
AB7
A
582 587Right-handed alpha
Helix 17
AB8
A
610 618Right-handed alpha
Helix 18
AB9
A
623 652Right-handed alpha
Helix 19
AC1
B
373 391Right-handed alpha
Helix 20
AC2
B
391 413Right-handed alpha
Helix 21
AC3
B
419 421Right-handed 310
Helix 22
AC4
B
422 441Right-handed alpha
Helix 23
AC5
B
442 450Right-handed 310
Helix 24
AC6
B
451 461Right-handed alpha
Helix 25
AC7
B
465 477Right-handed alpha
Helix 26
AC8
B
477 482Right-handed alpha
Helix 27
AC9
B
483 494Right-handed alpha
Helix 28
AD1
B
502 529Right-handed alpha
Helix 29
AD2
B
533 550Right-handed alpha
Helix 30
AD3
B
552 557Right-handed alpha
Helix 31
AD4
B
558 561Right-handed 310
Helix 32
AD5
B
565 571Right-handed 310
Helix 33
AD6
B
572 582Right-handed alpha
Helix 34
AD7
B
582 587Right-handed alpha
Helix 35
AD8
B
610 618Right-handed alpha
Helix 36
AD9
B
623 652Right-handed alpha
Helix 37
AE1
C
87 91Right-handed 310
Helix 38
AE2
E
87 91Right-handed 310
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There are 10 sheets in PDB entry 5NJG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
3 7first strand
Strand 2
C
17 25anti-parallel
Strand 3
C
78 84anti-parallel
Strand 4
C
68 73anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
11 12first strand
Strand 2
C
113 117parallel
Strand 3
C
92 99anti-parallel
Strand 4
C
34 40anti-parallel
Strand 5
C
46 52anti-parallel
Strand 6
C
58 60anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
11 12first strand
Strand 2
C
113 117parallel
Strand 3
C
92 99anti-parallel
Strand 4
C
106 109anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
5 6first strand
Strand 2
D
19 24anti-parallel
Strand 3
D
70 75anti-parallel
Strand 4
D
62 65anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
10 12first strand
Strand 2
D
102 105parallel
Strand 3
D
85 90anti-parallel
Strand 4
D
33 38anti-parallel
Strand 5
D
45 48anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
3 7first strand
Strand 2
E
17 25anti-parallel
Strand 3
E
78 84anti-parallel
Strand 4
E
68 73anti-parallel
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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
11 12first strand
Strand 2
E
113 117parallel
Strand 3
E
92 99anti-parallel
Strand 4
E
34 40anti-parallel
Strand 5
E
46 52anti-parallel
Strand 6
E
58 60anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
11 12first strand
Strand 2
E
113 117parallel
Strand 3
E
92 99anti-parallel
Strand 4
E
106 109anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
5 6first strand
Strand 2
F
19 24anti-parallel
Strand 3
F
70 75anti-parallel
Strand 4
F
62 65anti-parallel
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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
10 12first strand
Strand 2
F
102 105parallel
Strand 3
F
85 90anti-parallel
Strand 4
F
33 38anti-parallel
Strand 5
F
45 48anti-parallel
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