Analysis of interatomic Contacts of Structural Units in PDB entry:
5NJI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5NJI entry

There is 1 chain in PDB entry 5NJI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 926LEU 1217
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 9 helices in PDB entry 5NJI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
955 957Right-handed 310
Helix 2
AA2
A
968 984Right-handed alpha
Helix 3
AA3
A
1071 1082Right-handed alpha
Helix 4
AA4
A
1088 1091Right-handed 310
Helix 5
AA5
A
1111 1115Right-handed 310
Helix 6
AA6
A
1124 1134Right-handed alpha
Helix 7
AA7
A
1135 1137Right-handed 310
Helix 8
AA8
A
1138 1146Right-handed alpha
Helix 9
AA9
A
1174 1178Right-handed 310
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There are 2 sheets in PDB entry 5NJI. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 13 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
933 936first strand
Strand 2
A
943 949anti-parallel
Strand 3
A
1009 1017anti-parallel
Strand 4
A
1021 1028anti-parallel
Strand 5
A
1036 1045anti-parallel
Strand 6
A
992 999anti-parallel
Strand 7
A
1161 1171anti-parallel
Strand 8
A
1205 1216anti-parallel
Strand 9
A
1191 1199anti-parallel
Strand 10
A
1180 1188anti-parallel
Strand 11
A
1104 1108anti-parallel
Strand 12
A
1093 1099anti-parallel
Strand 13
A
1067 1070anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
964 965first strand
Strand 2
A
959 961anti-parallel
Strand 3
A
1084 1086anti-parallel
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