Analysis of interatomic Contacts of Structural Units in PDB entry:
5NJK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5NJK entry

There are 18 chains in PDB entry 5NJK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TRP 25LYS 171
B
 GLN 26GLN 170
C
 TRP 25LYS 169
D
 THR 27LYS 169
E
 ASP 28LYS 169
F
 HIS 23LYS 169
H
 ALA 1PRO 5
H
 LEU 7LEU 7
G
 ALA 1PRO 5
G
 LEU 7LEU 7
I
 ALA 1PRO 5
I
 LEU 7LEU 7
J
 ALA 1PRO 5
J
 LEU 7LEU 7
K
 ALA 1PRO 5
K
 LEU 7LEU 7
M
 ALA 1PRO 5
M
 LEU 7LEU 7
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 5NJK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
25 34Right-handed alpha
Helix 2
AA2
A
54 72Right-handed alpha
Helix 3
AA3
A
76 80Right-handed 310
Helix 4
AA4
A
150 169Right-handed alpha
Helix 5
AA5
B
27 34Right-handed alpha
Helix 6
AA6
B
54 72Right-handed alpha
Helix 7
AA7
B
72 79Right-handed alpha
Helix 8
AA8
B
150 167Right-handed alpha
Helix 9
AA9
C
26 34Right-handed alpha
Helix 10
AB1
C
54 67Right-handed alpha
Helix 11
AB2
C
150 169Right-handed alpha
Helix 12
AB3
D
28 34Right-handed alpha
Helix 13
AB4
D
54 76Right-handed alpha
Helix 14
AB5
D
150 169Right-handed alpha
Helix 15
AB6
E
29 34Right-handed alpha
Helix 16
AB7
E
54 72Right-handed alpha
Helix 17
AB8
E
150 169Right-handed alpha
Helix 18
AB9
F
24 34Right-handed alpha
Helix 19
AC1
F
54 72Right-handed alpha
Helix 20
AC2
F
150 169Right-handed alpha
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There are 6 sheets in PDB entry 5NJK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
105 110first strand
Strand 2
A
94 99anti-parallel
Strand 3
A
84 90anti-parallel
Strand 4
A
38 49anti-parallel
Strand 5
A
138 146anti-parallel
Strand 6
A
126 133anti-parallel
Strand 7
A
114 119anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
105 110first strand
Strand 2
B
94 99anti-parallel
Strand 3
B
85 90anti-parallel
Strand 4
B
37 49anti-parallel
Strand 5
B
138 146anti-parallel
Strand 6
B
126 133anti-parallel
Strand 7
B
114 119anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
105 110first strand
Strand 2
C
94 99anti-parallel
Strand 3
C
85 90anti-parallel
Strand 4
C
37 48anti-parallel
Strand 5
C
138 146anti-parallel
Strand 6
C
126 133anti-parallel
Strand 7
C
114 119anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
105 110first strand
Strand 2
D
94 98anti-parallel
Strand 3
D
87 90anti-parallel
Strand 4
D
37 49anti-parallel
Strand 5
D
138 146anti-parallel
Strand 6
D
126 133anti-parallel
Strand 7
D
114 119anti-parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
105 110first strand
Strand 2
E
94 99anti-parallel
Strand 3
E
84 90anti-parallel
Strand 4
E
38 49anti-parallel
Strand 5
E
138 146anti-parallel
Strand 6
E
126 133anti-parallel
Strand 7
E
114 119anti-parallel
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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
105 110first strand
Strand 2
F
94 99anti-parallel
Strand 3
F
84 90anti-parallel
Strand 4
F
37 49anti-parallel
Strand 5
F
138 146anti-parallel
Strand 6
F
126 133anti-parallel
Strand 7
F
114 119anti-parallel
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