Analysis of interatomic Contacts of Structural Units in PDB entry:
5NL2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5NL2 entry

There are 2 chains in PDB entry 5NL2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 123MET 909
B
 ASP 123MET 909
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 38 helices in PDB entry 5NL2. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
168 184Right-handed alpha
Helix 2
AA2
A
205 213Right-handed alpha
Helix 3
AA3
A
243 254Right-handed alpha
Helix 4
AA4
A
296 305Right-handed alpha
Helix 5
AA5
A
316 324Right-handed alpha
Helix 6
AA6
A
326 355Right-handed alpha
Helix 7
AA7
A
410 437Right-handed alpha
Helix 8
AA8
A
487 518Right-handed alpha
Helix 9
AA9
A
536 567Right-handed alpha
Helix 10
AB1
A
575 601Right-handed alpha
Helix 11
AB2
A
634 647Right-handed alpha
Helix 12
AB3
A
649 666Right-handed alpha
Helix 13
AB4
A
682 692Right-handed alpha
Helix 14
AB5
A
699 715Right-handed alpha
Helix 15
AB6
A
716 718Right-handed 310
Helix 16
AB7
A
722 744Right-handed alpha
Helix 17
AB8
A
758 781Right-handed alpha
Helix 18
AB9
A
856 884Right-handed alpha
Helix 19
AC1
A
893 909Right-handed alpha
Helix 20
AC2
B
168 184Right-handed alpha
Helix 21
AC3
B
205 213Right-handed alpha
Helix 22
AC4
B
243 254Right-handed alpha
Helix 23
AC5
B
296 305Right-handed alpha
Helix 24
AC6
B
316 324Right-handed alpha
Helix 25
AC7
B
326 355Right-handed alpha
Helix 26
AC8
B
410 437Right-handed alpha
Helix 27
AC9
B
487 518Right-handed alpha
Helix 28
AD1
B
536 567Right-handed alpha
Helix 29
AD2
B
575 601Right-handed alpha
Helix 30
AD3
B
634 647Right-handed alpha
Helix 31
AD4
B
649 666Right-handed alpha
Helix 32
AD5
B
682 692Right-handed alpha
Helix 33
AD6
B
699 715Right-handed alpha
Helix 34
AD7
B
716 718Right-handed 310
Helix 35
AD8
B
722 744Right-handed alpha
Helix 36
AD9
B
758 781Right-handed alpha
Helix 37
AE1
B
856 884Right-handed alpha
Helix 38
AE2
B
893 909Right-handed alpha
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There are 4 sheets in PDB entry 5NL2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
124 126first strand
Strand 2
A
279 281anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
186 191first strand
Strand 2
A
194 199anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
124 126first strand
Strand 2
B
279 281anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
186 191first strand
Strand 2
B
194 199anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il