Analysis of interatomic Contacts of Structural Units in PDB entry:
5NLA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5NLA entry

There is 1 chain in PDB entry 5NLA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 47VAL 380
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 5NLA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
58 68Right-handed alpha
Helix 2
AA2
A
112 119Right-handed alpha
Helix 3
AA3
A
174 179Right-handed alpha
Helix 4
AA4
A
181 188Right-handed alpha
Helix 5
AA5
A
195 212Right-handed alpha
Helix 6
AA6
A
219 235Right-handed alpha
Helix 7
AA7
A
250 262Right-handed alpha
Helix 8
AA8
A
269 276Right-handed alpha
Helix 9
AA9
A
280 289Right-handed alpha
Helix 10
AB1
A
293 307Right-handed alpha
Helix 11
AB2
A
372 377Right-handed alpha
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There are 2 sheets in PDB entry 5NLA. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
49 52first strand
Strand 2
A
88 94anti-parallel
Strand 3
A
97 104anti-parallel
Strand 4
A
166 173anti-parallel
Strand 5
A
124 131anti-parallel
Strand 6
A
150 154anti-parallel
Strand 7
A
191 193anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
72 74first strand
Strand 2
A
107 111anti-parallel
Strand 3
A
159 163anti-parallel
Strand 4
A
134 138anti-parallel
Strand 5
A
141 145anti-parallel
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