Analysis of interatomic Contacts of Structural Units in PDB entry:
5NLC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5NLC entry

There are 2 chains in PDB entry 5NLC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 3PRO 218
B
 GLN 3GLY 217
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 5NLC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
3 15Right-handed alpha
Helix 2
AA2
A
29 39Right-handed alpha
Helix 3
AA3
A
48 57Right-handed alpha
Helix 4
AA4
A
58 60Right-handed 310
Helix 5
AA5
A
74 76Right-handed 310
Helix 6
AA6
A
77 85Right-handed alpha
Helix 7
AA7
A
93 108Right-handed alpha
Helix 8
AA8
A
129 142Right-handed alpha
Helix 9
AA9
A
160 182Right-handed alpha
Helix 10
AB1
A
197 204Right-handed alpha
Helix 11
AB2
B
4 14Right-handed alpha
Helix 12
AB3
B
29 39Right-handed alpha
Helix 13
AB4
B
48 57Right-handed alpha
Helix 14
AB5
B
74 76Right-handed 310
Helix 15
AB6
B
77 85Right-handed alpha
Helix 16
AB7
B
93 108Right-handed alpha
Helix 17
AB8
B
129 142Right-handed alpha
Helix 18
AB9
B
160 182Right-handed alpha
Helix 19
AC1
B
197 204Right-handed alpha
Helix 20
AC2
B
212 217Right-handed alpha
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There are 2 sheets in PDB entry 5NLC. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
20 24first strand
Strand 2
A
43 46parallel
Strand 3
A
66 69parallel
Strand 4
A
87 91parallel
Strand 5
A
112 116parallel
Strand 6
A
147 152parallel
Strand 7
A
189 191parallel
Strand 8
A
208 211parallel
Strand 9
A
20 24parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
20 24first strand
Strand 2
B
43 46parallel
Strand 3
B
66 69parallel
Strand 4
B
87 91parallel
Strand 5
B
112 116parallel
Strand 6
B
147 152parallel
Strand 7
B
189 191parallel
Strand 8
B
208 211parallel
Strand 9
B
20 24parallel
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