Analysis of interatomic Contacts of Structural Units in PDB entry:
5NLM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5NLM entry

There are 2 chains in PDB entry 5NLM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 10LYS 476
B
 PRO 8LYS 200
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 43 helices in PDB entry 5NLM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
23 36Right-handed alpha
Helix 2
AA2
A
54 63Right-handed alpha
Helix 3
AA3
A
86 97Right-handed alpha
Helix 4
AA4
A
98 112Right-handed alpha
Helix 5
AA5
A
125 127Right-handed 310
Helix 6
AA6
A
128 135Right-handed alpha
Helix 7
AA7
A
146 163Right-handed alpha
Helix 8
AA8
A
166 170Right-handed 310
Helix 9
AA9
A
183 187Right-handed 310
Helix 10
AB1
A
188 192Right-handed 310
Helix 11
AB2
A
196 207Right-handed alpha
Helix 12
AB3
A
208 212Right-handed 310
Helix 13
AB4
A
224 233Right-handed alpha
Helix 14
AB5
A
261 270Right-handed alpha
Helix 15
AB6
A
287 301Right-handed alpha
Helix 16
AB7
A
329 333Right-handed 310
Helix 17
AB8
A
337 342Right-handed alpha
Helix 18
AB9
A
354 361Right-handed alpha
Helix 19
AC1
A
372 382Right-handed alpha
Helix 20
AC2
A
394 405Right-handed alpha
Helix 21
AC3
A
421 434Right-handed alpha
Helix 22
AC4
A
435 456Right-handed alpha
Helix 23
AC5
A
460 475Right-handed alpha
Helix 24
AC6
B
23 37Right-handed alpha
Helix 25
AC7
B
54 63Right-handed alpha
Helix 26
AC8
B
86 109Right-handed alpha
Helix 27
AC9
B
125 127Right-handed 310
Helix 28
AD1
B
128 135Right-handed alpha
Helix 29
AD2
B
146 163Right-handed alpha
Helix 30
AD3
B
183 187Right-handed 310
Helix 31
AD4
B
188 192Right-handed 310
Helix 32
AD5
B
196 208Right-handed alpha
Helix 33
AD6
B
209 212Right-handed 310
Helix 34
AD7
B
224 233Right-handed alpha
Helix 35
AD8
B
262 267Right-handed alpha
Helix 36
AD9
B
268 270Right-handed 310
Helix 37
AE1
B
287 301Right-handed alpha
Helix 38
AE2
B
354 361Right-handed alpha
Helix 39
AE3
B
372 382Right-handed alpha
Helix 40
AE4
B
394 404Right-handed alpha
Helix 41
AE5
B
421 434Right-handed alpha
Helix 42
AE6
B
435 455Right-handed alpha
Helix 43
AE7
B
461 475Right-handed alpha
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There are 4 sheets in PDB entry 5NLM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
68 72first strand
Strand 2
A
42 47parallel
Strand 3
A
15 19parallel
Strand 4
A
116 121parallel
Strand 5
A
138 143parallel
Strand 6
A
214 217parallel
Strand 7
A
241 243parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
346 350first strand
Strand 2
A
304 309parallel
Strand 3
A
275 279parallel
Strand 4
A
364 369parallel
Strand 5
A
386 388parallel
Strand 6
A
409 410parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
68 72first strand
Strand 2
B
42 47parallel
Strand 3
B
15 19parallel
Strand 4
B
116 121parallel
Strand 5
B
139 143parallel
Strand 6
B
214 217parallel
Strand 7
B
240 243parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
346 350first strand
Strand 2
B
304 309parallel
Strand 3
B
275 279parallel
Strand 4
B
364 369parallel
Strand 5
B
386 388parallel
Strand 6
B
409 410parallel
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