Analysis of interatomic Contacts of Structural Units in PDB entry:
5NLT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5NLT entry

There are 6 chains in PDB entry 5NLT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 2ALA 224
B
 THR 2GLU 227
C
 THR 2ASP 226
D
 THR 2ALA 224
E
 THR 2ASP 226
F
 THR 2ALA 224
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 5NLT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
36 40Right-handed 310
Helix 2
AA2
A
118 125Right-handed alpha
Helix 3
AA3
A
191 196Right-handed alpha
Helix 4
AA4
B
36 40Right-handed 310
Helix 5
AA5
B
118 125Right-handed alpha
Helix 6
AA6
B
191 196Right-handed alpha
Helix 7
AA7
C
36 40Right-handed 310
Helix 8
AA8
C
118 125Right-handed alpha
Helix 9
AA9
C
191 196Right-handed alpha
Helix 10
AB1
D
36 40Right-handed 310
Helix 11
AB2
D
118 125Right-handed alpha
Helix 12
AB3
D
191 196Right-handed alpha
Helix 13
AB4
E
36 40Right-handed 310
Helix 14
AB5
E
118 125Right-handed alpha
Helix 15
AB6
E
191 196Right-handed alpha
Helix 16
AB7
F
36 40Right-handed 310
Helix 17
AB8
F
118 125Right-handed alpha
Helix 18
AB9
F
191 196Right-handed alpha
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There are 18 sheets in PDB entry 5NLT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
12 13first strand
Strand 2
A
3 9anti-parallel
Strand 3
A
60 66anti-parallel
Strand 4
A
128 132anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
53 56first strand
Strand 2
A
167 178parallel
Strand 3
A
140 150anti-parallel
Strand 4
A
83 89anti-parallel
Strand 5
A
103 108anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
110 111first strand
Strand 2
A
116 117anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
12 13first strand
Strand 2
B
3 9anti-parallel
Strand 3
B
60 66anti-parallel
Strand 4
B
128 132anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
53 56first strand
Strand 2
B
167 178parallel
Strand 3
B
140 150anti-parallel
Strand 4
B
83 89anti-parallel
Strand 5
B
103 108anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
110 111first strand
Strand 2
B
116 117anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
12 13first strand
Strand 2
C
3 9anti-parallel
Strand 3
C
60 66anti-parallel
Strand 4
C
128 132anti-parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
53 56first strand
Strand 2
C
167 178parallel
Strand 3
C
140 150anti-parallel
Strand 4
C
83 89anti-parallel
Strand 5
C
103 108anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
110 111first strand
Strand 2
C
116 117anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
12 13first strand
Strand 2
D
3 9anti-parallel
Strand 3
D
60 66anti-parallel
Strand 4
D
128 132anti-parallel
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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
53 56first strand
Strand 2
D
167 178parallel
Strand 3
D
140 150anti-parallel
Strand 4
D
83 89anti-parallel
Strand 5
D
103 108anti-parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
110 111first strand
Strand 2
D
116 117anti-parallel
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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
12 13first strand
Strand 2
E
3 9anti-parallel
Strand 3
E
60 66anti-parallel
Strand 4
E
128 132anti-parallel
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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
53 56first strand
Strand 2
E
167 178parallel
Strand 3
E
140 150anti-parallel
Strand 4
E
83 89anti-parallel
Strand 5
E
103 108anti-parallel
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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
110 111first strand
Strand 2
E
116 117anti-parallel
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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
12 13first strand
Strand 2
F
3 9anti-parallel
Strand 3
F
60 66anti-parallel
Strand 4
F
128 132anti-parallel
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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
53 56first strand
Strand 2
F
167 178parallel
Strand 3
F
140 150anti-parallel
Strand 4
F
83 89anti-parallel
Strand 5
F
103 108anti-parallel
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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
110 111first strand
Strand 2
F
116 117anti-parallel
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