Analysis of interatomic Contacts of Structural Units in PDB entry:
5NLV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5NLV entry

There are 3 chains in PDB entry 5NLV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 386TYR 513
A
 ILE 515TYR 634
A
 ARG 636ARG 749
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 5NLV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
393 396Right-handed 310
Helix 2
AA2
A
397 416Right-handed alpha
Helix 3
AA3
A
416 427Right-handed alpha
Helix 4
AA4
A
433 444Right-handed alpha
Helix 5
AA5
A
448 457Right-handed alpha
Helix 6
AA6
A
461 474Right-handed alpha
Helix 7
AA7
A
481 493Right-handed alpha
Helix 8
AA8
A
498 517Right-handed alpha
Helix 9
AA9
A
517 523Right-handed alpha
Helix 10
AB1
A
528 545Right-handed alpha
Helix 11
AB2
A
550 554Right-handed 310
Helix 12
AB3
A
556 564Right-handed alpha
Helix 13
AB4
A
574 586Right-handed alpha
Helix 14
AB5
A
595 605Right-handed alpha
Helix 15
AB6
A
724 746Right-handed alpha
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There is 1 sheet (AA1) in PDB entry 5NLV.

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
607 608first strand
Strand 2
A
678 685parallel
Strand 3
A
662 668anti-parallel
Strand 4
A
653 659anti-parallel
Strand 5
A
631 639anti-parallel
Strand 6
A
716 721anti-parallel
Strand 7
A
702 707anti-parallel
Strand 8
A
689 694anti-parallel
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